-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1121

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 126, 171
Couldn't classify 2466, 2504
Sorry, prediction GeneMark_model.108922_t fails validation.
(GGA)	 AG	126-171	GT	GAG
(ACT)	 AG	362-518	GT	GAG
(AGT)	 AG	784-946	GT	CTG
(GGG)	 AG	2088-2101	GT	GCG
(GGA)	 AG	2245-2268	GT	GAG
(GAA)	 AG	2304-2327	GT	CTG
(TGT)	 AG	2466-2504	GT	GGG
-recovered GeneMark_model.108922_t, terminal, 126, 171
-recovered GeneMark_model.108922_t, internal, 126, 171
-recovered GeneMark_model.108922_t, internal, 362, 518
-recovered GeneMark_model.108922_t, internal, 784, 946
-recovered GeneMark_model.108922_t, internal, 2088, 2101
-recovered GeneMark_model.108922_t, internal, 2245, 2268
-recovered GeneMark_model.108922_t, internal, 2304, 2327
-recovered GeneMark_model.108922_t, internal, 2466, 2504
Couldn't classify 362, 528
Sorry, prediction snap_scaffold_1121-snap.1-T1 fails validation.
(ACT)	 AG	362-528	GT	AGG
(ACA)	 AG	758-946	GT	CTG
(TCC)	 AG	2041-2097	CA	AAC
-recovered snap_scaffold_1121-snap.1-T1, terminal, 2041, 2097
-recovered snap_scaffold_1121-snap.1-T1, internal, 362, 528
-recovered snap_scaffold_1121-snap.1-T1, internal, 758, 946
Couldn't classify 362, 528
Sorry, prediction Augustus_model.g41539.t1 fails validation.
(ACT)	 AG	362-528	GT	AGG
(ACA)	 AG	758-946	GT	CTG
(TCC)	 AG	2041-2097	CA	AAC
-recovered Augustus_model.g41539.t1, terminal, 2041, 2097
-recovered Augustus_model.g41539.t1, internal, 362, 528
-recovered Augustus_model.g41539.t1, internal, 758, 946
Valid prediction for GlimmerHMM_glimmerT_62481-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62481-T1 362-594-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1121-snap.2-T1
Couldn't classify 1135, 1245
Sorry, prediction GlimmerHMM_glimmerT_62482-T1 fails validation.
(GAG)	 AG	1135-1245	GT	GAG
(TTG)	 AG	1568-1633	GT	AGG
(GGC)	 AG	2332-2340	GG	GAG
-recovered GlimmerHMM_glimmerT_62482-T1, terminal, 2332, 2340
-recovered GlimmerHMM_glimmerT_62482-T1, internal, 1135, 1245
-recovered GlimmerHMM_glimmerT_62482-T1, internal, 1568, 1633

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2097, rend_intergenic: 669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3227
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2097, rend_intergenic: 669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support