-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1120

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2609, 2728
Sorry, prediction Augustus_model.g41538.t1 fails validation.
(ATG)	 TT	1661-1691	GT	GCG
(TTC)	 AG	2609-2728	GT	GGG
-recovered Augustus_model.g41538.t1, initial, 1661, 1691
-recovered Augustus_model.g41538.t1, internal, 2609, 2728

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 607, 641
Couldn't classify 3076, 3217
Sorry, prediction GeneMark_model.108921_t fails validation.
(GCT)	 AG	607-641	GT	GAG
(AAG)	 AG	668-688	GT	GAG
(GAT)	 AG	714-731	GT	GAG
(AGG)	 AG	772-849	GT	AGG
(AGA)	 AG	981-1034	GT	GGG
(GGA)	 AG	1058-1087	GT	GGG
(AAG)	 AG	1113-1124	GT	GAG
(GGT)	 AG	1151-1177	GT	AAG
(GGA)	 AG	1204-1230	GT	AAG
(GAG)	 AG	1266-1286	GT	GAG
(AGA)	 AG	1308-1316	GT	GAG
(AGA)	 AG	2070-2093	GT	AAG
(GGA)	 AG	2391-2546	GC	GAG
(AGA)	 AG	2570-2602	GT	GAG
(GGA)	 AG	2630-2650	GT	GAG
(AAA)	 AG	2674-2706	GT	GAG
(AGA)	 AG	2738-2782	GT	GAG
(TGA)	 AG	2804-2914	GT	GAG
(AGC)	 AG	2936-3004	GT	GAG
(GGA)	 AG	3028-3054	GT	GAG
(CGA)	 AG	3076-3217	GT	AGG
-recovered GeneMark_model.108921_t, terminal, 1151, 1177
-recovered GeneMark_model.108921_t, internal, 607, 641
-recovered GeneMark_model.108921_t, internal, 668, 688
-recovered GeneMark_model.108921_t, internal, 714, 731
-recovered GeneMark_model.108921_t, internal, 772, 849
-recovered GeneMark_model.108921_t, internal, 981, 1034
-recovered GeneMark_model.108921_t, internal, 1058, 1087
-recovered GeneMark_model.108921_t, internal, 1113, 1124
-recovered GeneMark_model.108921_t, internal, 1151, 1177
-recovered GeneMark_model.108921_t, internal, 1204, 1230
-recovered GeneMark_model.108921_t, internal, 1266, 1286
-recovered GeneMark_model.108921_t, internal, 1308, 1316
-recovered GeneMark_model.108921_t, internal, 2070, 2093
-recovered GeneMark_model.108921_t, internal, 2391, 2546
-recovered GeneMark_model.108921_t, internal, 2570, 2602
-recovered GeneMark_model.108921_t, internal, 2630, 2650
-recovered GeneMark_model.108921_t, internal, 2674, 2706
-recovered GeneMark_model.108921_t, internal, 2738, 2782
-recovered GeneMark_model.108921_t, internal, 2804, 2914
-recovered GeneMark_model.108921_t, internal, 2936, 3004
-recovered GeneMark_model.108921_t, internal, 3028, 3054
-recovered GeneMark_model.108921_t, internal, 3076, 3217

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3234
-exon list size: 56


building trellis

1.7    
3.4    
5.2    
6.9    
8.6    
10.3    
12.1    
13.8    
15.5    
17.2    
19.0    
20.7    
22.4    
24.1    
25.9    
27.6    
29.3    
31.0    
32.8    
34.5    
36.2    
37.9    
39.7    
41.4    
43.1    
44.8    
46.6    
48.3    
50.0    
51.7    
53.4    
55.2    
56.9    
58.6    
60.3    
62.1    
63.8    
65.5    
67.2    
69.0    
70.7    
72.4    
74.1    
75.9    
77.6    
79.3    
81.0    
82.8    
84.5    
86.2    
87.9    
89.7    
91.4    
93.1    
94.8    
96.6    
98.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support