-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1119

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 384, 470
Sorry, prediction GeneMark_model.108919_t fails validation.
(TCA)	 AG	384-470	GT	AGG
(CGA)	 AG	502-540	GT	AGG
(GGG)	 AG	565-645	GT	AGG
(AGC)	 AG	677-682	GT	AGG
(AGC)	 AG	712-717	GT	AGG
(GGG)	 AG	742-822	GT	AGG
(TTA)	 AG	863-866	GA	AAG
-recovered GeneMark_model.108919_t, terminal, 863, 866
-recovered GeneMark_model.108919_t, internal, 384, 470
-recovered GeneMark_model.108919_t, internal, 502, 540
-recovered GeneMark_model.108919_t, internal, 565, 645
-recovered GeneMark_model.108919_t, internal, 677, 682
-recovered GeneMark_model.108919_t, internal, 712, 717
-recovered GeneMark_model.108919_t, internal, 742, 822

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 704, 721
Sorry, prediction GeneMark_model.108920_t fails validation.
(GGA)	 AG	704-721	GT	AGG
(AGA)	 AG	746-757	GC	GAG
(GAG)	 AG	786-956	GT	GAG
(AGA)	 AG	982-1116	GC	GGG
(GGG)	 AG	1144-1182	GC	AGG
(AAG)	 AG	1215-1262	GC	AGG
(AGG)	 AG	1962-2018	GT	GAG
(AGG)	 AG	2246-2269	GT	AGG
(GGA)	 AG	2294-2317	GT	AGG
(GTA)	 AG	2338-2341	GG	AAG
-recovered GeneMark_model.108920_t, terminal, 2338, 2341
-recovered GeneMark_model.108920_t, internal, 704, 721
-recovered GeneMark_model.108920_t, internal, 746, 757
-recovered GeneMark_model.108920_t, internal, 786, 956
-recovered GeneMark_model.108920_t, internal, 982, 1116
-recovered GeneMark_model.108920_t, internal, 1144, 1182
-recovered GeneMark_model.108920_t, internal, 1215, 1262
-recovered GeneMark_model.108920_t, internal, 1962, 2018
-recovered GeneMark_model.108920_t, internal, 2246, 2269
-recovered GeneMark_model.108920_t, internal, 2294, 2317

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3241
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support