-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1118

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62479-T1
Couldn't classify 2880, 3008
Sorry, prediction GlimmerHMM_glimmerT_62480-T1 fails validation.
(ATG)	 TC	609-638	GT	AGG
(GTG)	 AG	1722-1902	GT	AGG
(ACA)	 AG	2433-2584	GT	AGG
(CTG)	 AG	2880-3008	GT	AGG
-recovered GlimmerHMM_glimmerT_62480-T1, initial, 609, 638
-recovered GlimmerHMM_glimmerT_62480-T1, internal, 1722, 1902
-recovered GlimmerHMM_glimmerT_62480-T1, internal, 2433, 2584
-recovered GlimmerHMM_glimmerT_62480-T1, internal, 2880, 3008
Couldn't classify 220, 392
Couldn't classify 1722, 1766
Sorry, prediction pasa_asmbl_7372.p1 fails validation.
(CGG)	 TG	220-392	GT	GGG
(ACA)	 AG	554-638	GT	AGG
(GTG)	 AG	1722-1766	GG	GAG
-recovered pasa_asmbl_7372.p1, internal, 554, 638
Couldn't classify 187, 392
Couldn't classify 2880, 3008
Sorry, prediction Augustus_model.g41537.t1 fails validation.
(ACC)	 AG	187-392	GT	GGG
(ACA)	 AG	554-638	GT	AGG
(GTG)	 AG	1722-1902	GT	AGG
(ACA)	 AG	2433-2584	GT	AGG
(CTG)	 AG	2880-3008	GT	AGG
-recovered Augustus_model.g41537.t1, internal, 187, 392
-recovered Augustus_model.g41537.t1, internal, 554, 638
-recovered Augustus_model.g41537.t1, internal, 1722, 1902
-recovered Augustus_model.g41537.t1, internal, 2433, 2584
-recovered Augustus_model.g41537.t1, internal, 2880, 3008
Couldn't classify 187, 392
Couldn't classify 2880, 3008
Sorry, prediction GeneMark_model.108918_t fails validation.
(ACC)	 AG	187-392	GT	GGG
(GGA)	 AG	435-515	GT	ACG
(ACA)	 AG	554-638	GT	AGG
(GTG)	 AG	1722-1978	GT	GGG
(GAG)	 AG	2013-2084	GT	TGG
(GGA)	 AG	2108-2200	GT	GGG
(AAG)	 AG	2236-2279	GT	CAG
(ACA)	 AG	2433-2584	GT	AGG
(CTG)	 AG	2880-3008	GT	AGG
-recovered GeneMark_model.108918_t, internal, 187, 392
-recovered GeneMark_model.108918_t, internal, 435, 515
-recovered GeneMark_model.108918_t, internal, 554, 638
-recovered GeneMark_model.108918_t, internal, 1722, 1978
-recovered GeneMark_model.108918_t, internal, 2013, 2084
-recovered GeneMark_model.108918_t, internal, 2108, 2200
-recovered GeneMark_model.108918_t, internal, 2236, 2279
-recovered GeneMark_model.108918_t, internal, 2433, 2584
-recovered GeneMark_model.108918_t, internal, 2880, 3008
Couldn't classify 187, 392
Couldn't classify 2880, 3008
Sorry, prediction snap_scaffold_1118-snap.1-T1 fails validation.
(ACC)	 AG	187-392	GT	GGG
(ACA)	 AG	554-638	GT	AGG
(GTG)	 AG	1722-1978	GT	GGG
(GGG)	 AG	2091-2284	GT	GAG
(ACA)	 AG	2433-2584	GT	AGG
(CTG)	 AG	2880-3008	GT	AGG
-recovered snap_scaffold_1118-snap.1-T1, internal, 187, 392
-recovered snap_scaffold_1118-snap.1-T1, internal, 554, 638
-recovered snap_scaffold_1118-snap.1-T1, internal, 1722, 1978
-recovered snap_scaffold_1118-snap.1-T1, internal, 2091, 2284
-recovered snap_scaffold_1118-snap.1-T1, internal, 2433, 2584
-recovered snap_scaffold_1118-snap.1-T1, internal, 2880, 3008

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3244
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support