-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1117

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2715, 2888
Sorry, prediction Augustus_model.g41536.t1 fails validation.
(ATG)	 CC	74-204	GT	TTG
(CGT)	 AG	861-1036	GT	ACG
(TTG)	 AG	1470-1509	GT	AGG
(GTT)	 AG	1626-1722	GT	AGG
(AGA)	 AG	1931-2071	GT	AGG
(GTG)	 AG	2715-2888	GT	TGG
-recovered Augustus_model.g41536.t1, initial, 74, 204
-recovered Augustus_model.g41536.t1, internal, 861, 1036
-recovered Augustus_model.g41536.t1, internal, 1470, 1509
-recovered Augustus_model.g41536.t1, internal, 1626, 1722
-recovered Augustus_model.g41536.t1, internal, 1931, 2071
-recovered Augustus_model.g41536.t1, internal, 2715, 2888
Valid prediction for GlimmerHMM_glimmerT_62478-T1
Couldn't classify 2715, 2888
Sorry, prediction snap_scaffold_1117-snap.1-T1 fails validation.
(ATG)	 CA	671-676	GT	CCG
(GAA)	 AG	721-1036	GT	ACG
(TTG)	 AG	1470-1509	GT	AGG
(GTT)	 AG	1626-1722	GT	AGG
(AGA)	 AG	1931-2071	GT	AGG
(GTG)	 AG	2715-2888	GT	TGG
-recovered snap_scaffold_1117-snap.1-T1, initial, 671, 676
-recovered snap_scaffold_1117-snap.1-T1, internal, 721, 1036
-recovered snap_scaffold_1117-snap.1-T1, internal, 1470, 1509
-recovered snap_scaffold_1117-snap.1-T1, internal, 1626, 1722
-recovered snap_scaffold_1117-snap.1-T1, internal, 1931, 2071
-recovered snap_scaffold_1117-snap.1-T1, internal, 2715, 2888
Valid prediction for GlimmerHMM_glimmerT_62477-T1
Couldn't classify 48, 204
Couldn't classify 2715, 2888
Sorry, prediction GeneMark_model.108917_t fails validation.
(TTA)	 AG	48-204	GT	TTG
(CGT)	 AG	861-1022	GT	TTG
(GTT)	 AG	1626-1722	GT	AGG
(AGA)	 AG	1931-2071	GT	AGG
(GTG)	 AG	2715-2888	GT	TGG
-recovered GeneMark_model.108917_t, internal, 48, 204
-recovered GeneMark_model.108917_t, internal, 861, 1022
-recovered GeneMark_model.108917_t, internal, 1626, 1722
-recovered GeneMark_model.108917_t, internal, 1931, 2071
-recovered GeneMark_model.108917_t, internal, 2715, 2888

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3244
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support