-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1116

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3196, 3205
Sorry, prediction GeneMark_model.108916_t fails validation.
(ATG)	 AC	820-839	GT	GGG
(GGA)	 AG	863-1012	GT	TGG
(GGA)	 AG	1038-1051	GT	GAG
(GAG)	 AG	1081-1165	GT	CAG
(AGA)	 AG	1192-1320	GT	GGG
(GAA)	 AG	2133-2417	GT	AGG
(GAG)	 AG	3196-3205	GT	GAG
-recovered GeneMark_model.108916_t, initial, 820, 839
-recovered GeneMark_model.108916_t, internal, 863, 1012
-recovered GeneMark_model.108916_t, internal, 1038, 1051
-recovered GeneMark_model.108916_t, internal, 1081, 1165
-recovered GeneMark_model.108916_t, internal, 1192, 1320
-recovered GeneMark_model.108916_t, internal, 2133, 2417
-recovered GeneMark_model.108916_t, internal, 3196, 3205
Valid prediction for snap_scaffold_1116-snap.1-T1
add_exon() Sorry, snap_scaffold_1116-snap.1-T1 723-931-terminal-1 is invalid.
Valid prediction for snap_scaffold_1116-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108915_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3245
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support