-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1114

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 475, 527
Sorry, prediction GeneMark_model.108913_t fails validation.
(AGA)	 AG	475-527	GT	AGG
(AGC)	 AG	700-880	GC	GAG
(GCA)	 AG	902-916	GC	GAG
(GCA)	 AG	938-952	GC	GAG
(GCA)	 AG	974-1090	GT	CAG
(AGA)	 AG	1124-1132	GT	GAG
(ACG)	 AG	1182-1209	TG	GAT
-recovered GeneMark_model.108913_t, terminal, 1124, 1132
-recovered GeneMark_model.108913_t, terminal, 1182, 1209
-recovered GeneMark_model.108913_t, internal, 475, 527
-recovered GeneMark_model.108913_t, internal, 700, 880
-recovered GeneMark_model.108913_t, internal, 902, 916
-recovered GeneMark_model.108913_t, internal, 938, 952
-recovered GeneMark_model.108913_t, internal, 974, 1090
-recovered GeneMark_model.108913_t, internal, 1124, 1132
Valid prediction for GlimmerHMM_glimmerT_62476-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62476-T1 1323-1546-terminal-1 is invalid.
Couldn't classify 700, 1128
Couldn't classify 1602, 1688
Sorry, prediction snap_scaffold_1114-snap.1-T1 fails validation.
(AGC)	 AG	700-1128	GT	AAG
(CTC)	 AG	1602-1688	GT	AGG
-recovered snap_scaffold_1114-snap.1-T1, internal, 700, 1128
-recovered snap_scaffold_1114-snap.1-T1, internal, 1602, 1688
Valid prediction for GeneMark_model.108912_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3247
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support