-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1113

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1980, 2155
Couldn't classify 2556, 3227
Sorry, prediction GeneMark_model.108911_t fails validation.
(GAA)	 AG	1980-2155	GT	CGG
(AGG)	 AG	2205-2518	GT	GGG
(AGT)	 AG	2556-3227	GC	CCG
-recovered GeneMark_model.108911_t, internal, 1980, 2155
-recovered GeneMark_model.108911_t, internal, 2205, 2518
-recovered GeneMark_model.108911_t, internal, 2556, 3227
Couldn't classify 2613, 3248
Sorry, prediction Augustus_model.g41535.t1 fails validation.
(ATG)	 CC	2613-3248		CC
Valid prediction for Augustus_model.g41534.t1
Valid prediction for snap_scaffold_1113-snap.1-T1
Valid prediction for snap_scaffold_1113-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_62474-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62474-T1 2175-2587-terminal-1 is invalid.
Couldn't classify 2613, 3248
Sorry, prediction GlimmerHMM_glimmerT_62475-T1 fails validation.
(ATG)	 CC	2613-3248		CC

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3248
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support