-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1110

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108907_t
Couldn't classify 377, 418
Sorry, prediction GeneMark_model.108906_t fails validation.
(GAG)	 AG	377-418	GT	GAG
(GAG)	 AG	441-485	GC	GAG
(GGA)	 AG	514-570	GT	GAG
(GAG)	 AG	591-762	GA	GAG
-recovered GeneMark_model.108906_t, terminal, 591, 762
-recovered GeneMark_model.108906_t, internal, 377, 418
-recovered GeneMark_model.108906_t, internal, 441, 485
-recovered GeneMark_model.108906_t, internal, 514, 570

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 38, 79
Sorry, prediction GeneMark_model.108908_t fails validation.
(AGA)	 AG	38-79	GT	ATG
(AAA)	 AG	161-166	GT	AAG
(AAG)	 AG	781-864	GT	GAG
(TGA)	 AG	1768-1783	AG	AAA
-recovered GeneMark_model.108908_t, terminal, 1768, 1783
-recovered GeneMark_model.108908_t, internal, 38, 79
-recovered GeneMark_model.108908_t, internal, 161, 166
-recovered GeneMark_model.108908_t, internal, 781, 864

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3258
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support