-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1109

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 766, 861
Couldn't classify 3039, 3099
Sorry, prediction GeneMark_model.108905_t fails validation.
(AGG)	 AG	766-861	GT	GTG
(AGG)	 AG	902-961	GT	GAG
(AGA)	 AG	989-1075	GT	AGG
(AGA)	 AG	1105-1176	GT	GAG
(AGA)	 AG	1198-1318	GT	ACG
(CTC)	 AG	1377-1420	GT	GGG
(AGG)	 AG	1526-1555	GT	AGG
(GGA)	 AG	1579-1611	GT	GAG
(AAC)	 AG	1667-1777	GC	GAG
(GAG)	 AG	1801-1881	GT	GAG
(ACG)	 AG	1907-1915	GT	AGG
(AGA)	 AG	1946-2065	GT	AGG
(AGA)	 AG	2092-2103	GT	AGG
(AAG)	 AG	2142-2201	GT	AAG
(GGG)	 AG	2311-2319	GT	AGG
(GGG)	 AG	2399-2440	GT	CAG
(GTC)	 AG	3039-3099	GT	AGG
-recovered GeneMark_model.108905_t, internal, 766, 861
-recovered GeneMark_model.108905_t, internal, 902, 961
-recovered GeneMark_model.108905_t, internal, 989, 1075
-recovered GeneMark_model.108905_t, internal, 1105, 1176
-recovered GeneMark_model.108905_t, internal, 1198, 1318
-recovered GeneMark_model.108905_t, internal, 1377, 1420
-recovered GeneMark_model.108905_t, internal, 1526, 1555
-recovered GeneMark_model.108905_t, internal, 1579, 1611
-recovered GeneMark_model.108905_t, internal, 1667, 1777
-recovered GeneMark_model.108905_t, internal, 1801, 1881
-recovered GeneMark_model.108905_t, internal, 1907, 1915
-recovered GeneMark_model.108905_t, internal, 1946, 2065
-recovered GeneMark_model.108905_t, internal, 2092, 2103
-recovered GeneMark_model.108905_t, internal, 2142, 2201
-recovered GeneMark_model.108905_t, internal, 2311, 2319
-recovered GeneMark_model.108905_t, internal, 2399, 2440
-recovered GeneMark_model.108905_t, internal, 3039, 3099
Couldn't classify 64, 124
Sorry, prediction snap_scaffold_1109-snap.1-T1 fails validation.
(GCA)	 AG	64-124	GT	ACG
(CTC)	 AG	1377-1420	GT	GGG
(AAC)	 AG	1667-1796	AG	AGA
-recovered snap_scaffold_1109-snap.1-T1, terminal, 1667, 1796
-recovered snap_scaffold_1109-snap.1-T1, internal, 64, 124
-recovered snap_scaffold_1109-snap.1-T1, internal, 1377, 1420

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3266
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support