-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1107

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 96, 569
Couldn't classify 2494, 2775
Sorry, prediction Augustus_model.g41530.t1 fails validation.
(ACC)	 AG	96-569	GT	AGG
(CTG)	 AG	2494-2775	GT	TGG
-recovered Augustus_model.g41530.t1, internal, 96, 569
-recovered Augustus_model.g41530.t1, internal, 2494, 2775
Couldn't classify 81, 569
Sorry, prediction snap_scaffold_1107-snap.1-T1 fails validation.
(TTG)	 AG	81-569	GT	AGG
(TGA)	 AG	616-689	AT	GAA
-recovered snap_scaffold_1107-snap.1-T1, terminal, 616, 689
-recovered snap_scaffold_1107-snap.1-T1, internal, 81, 569
Couldn't classify 96, 656
Sorry, prediction GlimmerHMM_glimmerT_62469-T1 fails validation.
(ACC)	 AG	96-656	GT	AGG
(CTG)	 AG	2494-2837	CT	AGC
-recovered GlimmerHMM_glimmerT_62469-T1, terminal, 2494, 2837
-recovered GlimmerHMM_glimmerT_62469-T1, internal, 96, 656
Couldn't classify 81, 276
Sorry, prediction GeneMark_model.108903_t fails validation.
(TTG)	 AG	81-276	GT	GAG
(CCA)	 AG	421-484	GT	ATG
(CTG)	 AG	2494-2679	GG	GAG
-recovered GeneMark_model.108903_t, terminal, 2494, 2679
-recovered GeneMark_model.108903_t, internal, 81, 276
-recovered GeneMark_model.108903_t, internal, 421, 484

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3278
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support