-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1106

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 52, 294
Couldn't classify 1392, 1520
Sorry, prediction GeneMark_model.108902_t fails validation.
(GGG)	 AG	52-294	GT	AGG
(GAT)	 AG	327-404	GC	AGG
(TAA)	 AG	436-452	GT	GAG
(GTC)	 AG	1392-1520	GT	AGG
-recovered GeneMark_model.108902_t, internal, 52, 294
-recovered GeneMark_model.108902_t, internal, 327, 404
-recovered GeneMark_model.108902_t, internal, 436, 452
-recovered GeneMark_model.108902_t, internal, 1392, 1520
Couldn't classify 134, 294
Couldn't classify 1392, 1520
Sorry, prediction snap_scaffold_1106-snap.1-T1 fails validation.
(GAC)	 AG	134-294	GT	AGG
(GTC)	 AG	1392-1520	GT	AGG
-recovered snap_scaffold_1106-snap.1-T1, internal, 134, 294
-recovered snap_scaffold_1106-snap.1-T1, internal, 1392, 1520
Couldn't classify 134, 294
Couldn't classify 1392, 1520
Sorry, prediction Augustus_model.g41529.t1 fails validation.
(GAC)	 AG	134-294	GT	AGG
(GTC)	 AG	1392-1520	GT	AGG
-recovered Augustus_model.g41529.t1, internal, 134, 294
-recovered Augustus_model.g41529.t1, internal, 1392, 1520

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3280
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support