-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1105

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2646, 3225
Sorry, prediction snap_scaffold_1105-snap.1-T1 fails validation.
(ATG)	 AA	2341-2363	GT	AGG
(CCC)	 AG	2646-3225	GT	AGG
-recovered snap_scaffold_1105-snap.1-T1, initial, 2341, 2363
-recovered snap_scaffold_1105-snap.1-T1, internal, 2646, 3225
Valid prediction for GlimmerHMM_glimmerT_62468-T1
Couldn't classify 2646, 3043
Sorry, prediction Augustus_model.g41528.t1 fails validation.
(ATG)	 AA	2341-2363	GT	AGG
(CCC)	 AG	2646-3043	GT	AGG
-recovered Augustus_model.g41528.t1, initial, 2341, 2363
-recovered Augustus_model.g41528.t1, internal, 2646, 3043

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3284
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support