-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1103

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 619, 624
Couldn't classify 3199, 3233
Sorry, prediction GeneMark_model.108901_t fails validation.
(GAG)	 AG	619-624	GT	GGG
(GAG)	 AG	647-661	GT	GTG
(GGT)	 AG	685-696	GT	ATG
(GAG)	 AG	719-733	GT	ATG
(GGT)	 AG	757-768	GT	ATG
(AGA)	 AG	1035-1082	GT	GGG
(AGC)	 AG	2434-2439	GT	CAG
(ACA)	 AG	2871-2942	GT	AGG
(AGT)	 AG	2966-2997	GT	GAG
(CTA)	 AG	3028-3049	GT	GAG
(AGA)	 AG	3077-3109	GT	GAG
(AGG)	 AG	3155-3169	GT	GAG
(AGA)	 AG	3199-3233	GT	GAG
-recovered GeneMark_model.108901_t, internal, 619, 624
-recovered GeneMark_model.108901_t, internal, 647, 661
-recovered GeneMark_model.108901_t, internal, 685, 696
-recovered GeneMark_model.108901_t, internal, 719, 733
-recovered GeneMark_model.108901_t, internal, 757, 768
-recovered GeneMark_model.108901_t, internal, 1035, 1082
-recovered GeneMark_model.108901_t, internal, 2434, 2439
-recovered GeneMark_model.108901_t, internal, 2871, 2942
-recovered GeneMark_model.108901_t, internal, 2966, 2997
-recovered GeneMark_model.108901_t, internal, 3028, 3049
-recovered GeneMark_model.108901_t, internal, 3077, 3109
-recovered GeneMark_model.108901_t, internal, 3155, 3169
-recovered GeneMark_model.108901_t, internal, 3199, 3233

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3286
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support