-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1102

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 61, 135
Sorry, prediction GeneMark_model.108899_t fails validation.
(GTC)	 AG	61-135	GT	AGG
(GGA)	 AG	599-643	GT	GGG
(GGA)	 AG	675-707	GT	GGG
(GGA)	 AG	735-746	GT	GGG
(GGA)	 AG	1381-1413	GT	CAG
(GAA)	 AG	1439-1459	GT	GAG
(GGA)	 AG	1545-1590	AG	GAA
-recovered GeneMark_model.108899_t, terminal, 1545, 1590
-recovered GeneMark_model.108899_t, internal, 61, 135
-recovered GeneMark_model.108899_t, internal, 599, 643
-recovered GeneMark_model.108899_t, internal, 675, 707
-recovered GeneMark_model.108899_t, internal, 735, 746
-recovered GeneMark_model.108899_t, internal, 1381, 1413
-recovered GeneMark_model.108899_t, internal, 1439, 1459

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3136, 3261
Sorry, prediction Augustus_model.g41527.t1 fails validation.
(ATG)	 CC	52-124	GT	CGG
(GAT)	 AG	3136-3261	GT	CAG
-recovered Augustus_model.g41527.t1, initial, 52, 124
-recovered Augustus_model.g41527.t1, internal, 3136, 3261
Couldn't classify 26, 124
Couldn't classify 3136, 3254
Sorry, prediction snap_scaffold_1102-snap.1-T1 fails validation.
(GTC)	 AG	26-124	GT	CGG
(GAT)	 AG	3136-3254	GT	TAG
-recovered snap_scaffold_1102-snap.1-T1, internal, 26, 124
-recovered snap_scaffold_1102-snap.1-T1, internal, 3136, 3254
Couldn't classify 26, 124
Sorry, prediction GeneMark_model.108900_t fails validation.
(GTC)	 AG	26-124	GT	CGG
(GAG)	 AG	432-529	CT	AAC
-recovered GeneMark_model.108900_t, terminal, 432, 529
-recovered GeneMark_model.108900_t, internal, 26, 124

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3290
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support