-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1101

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62467-T1
Couldn't classify 15, 271
Sorry, prediction GeneMark_model.108897_t fails validation.
(GCC)	 AG	15-271	GT	AGG
(ACT)	 AG	490-681	GT	AGG
(AGC)	 AG	785-1091	GC	AAG
(GAG)	 AG	1112-1270	GT	GGG
(GGA)	 AG	1293-1338	AA	AGA
-recovered GeneMark_model.108897_t, terminal, 1293, 1338
-recovered GeneMark_model.108897_t, internal, 15, 271
-recovered GeneMark_model.108897_t, internal, 490, 681
-recovered GeneMark_model.108897_t, internal, 785, 1091
-recovered GeneMark_model.108897_t, internal, 1112, 1270
Couldn't classify 79, 271
Couldn't classify 3016, 3171
Sorry, prediction snap_scaffold_1101-snap.1-T1 fails validation.
(AGA)	 AG	79-271	GT	AGG
(ACT)	 AG	490-681	GT	AGG
(AAC)	 AG	755-1270	GT	GGG
(CTG)	 AG	3016-3171	GT	GGG
-recovered snap_scaffold_1101-snap.1-T1, internal, 79, 271
-recovered snap_scaffold_1101-snap.1-T1, internal, 490, 681
-recovered snap_scaffold_1101-snap.1-T1, internal, 755, 1270
-recovered snap_scaffold_1101-snap.1-T1, internal, 3016, 3171
Couldn't classify 79, 271
Sorry, prediction Augustus_model.g41526.t1 fails validation.
(AGA)	 AG	79-271	GT	AGG
(ACT)	 AG	490-681	GT	AGG
(AAC)	 AG	755-895	GT	CAG
(GAG)	 AG	1912-2018	TA	AGT
-recovered Augustus_model.g41526.t1, terminal, 1912, 2018
-recovered Augustus_model.g41526.t1, internal, 79, 271
-recovered Augustus_model.g41526.t1, internal, 490, 681
-recovered Augustus_model.g41526.t1, internal, 755, 895

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1404, 1535
Sorry, prediction GeneMark_model.108898_t fails validation.
(GGG)	 AG	1404-1535	GC	AGG
(ATC)	 AG	1580-1621	GT	AAG
(AGA)	 AG	1651-1660	GG	GAG
-recovered GeneMark_model.108898_t, terminal, 1651, 1660
-recovered GeneMark_model.108898_t, internal, 1404, 1535
-recovered GeneMark_model.108898_t, internal, 1580, 1621
Couldn't classify 1377, 1677
Couldn't classify 2626, 2813
Sorry, prediction snap_scaffold_1101-snap.2-T1 fails validation.
(CTC)	 AG	1377-1677	GT	GGG
(GGG)	 AG	2626-2813	GT	ATG
-recovered snap_scaffold_1101-snap.2-T1, internal, 1377, 1677
-recovered snap_scaffold_1101-snap.2-T1, internal, 2626, 2813

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3171, rend_intergenic: 480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3292
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3171, rend_intergenic: 480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support