-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1100

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 35, 61
Sorry, prediction GeneMark_model.108895_t fails validation.
(GTC)	 AG	35-61	GT	GCG
(GAG)	 AG	584-589	GT	AGG
(GAG)	 AG	611-785	GG	GAG
-recovered GeneMark_model.108895_t, terminal, 611, 785
-recovered GeneMark_model.108895_t, internal, 35, 61
-recovered GeneMark_model.108895_t, internal, 584, 589
Couldn't classify 2132, 2183
Sorry, prediction snap_scaffold_1100-snap.1-T1 fails validation.
(ATG)	 TA	328-418	GT	TAG
(ATA)	 AG	540-747	GT	AGG
(GCA)	 AG	2132-2183	GT	CGG
-recovered snap_scaffold_1100-snap.1-T1, initial, 328, 418
-recovered snap_scaffold_1100-snap.1-T1, internal, 540, 747
-recovered snap_scaffold_1100-snap.1-T1, internal, 2132, 2183

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1677, 1817
Sorry, prediction GlimmerHMM_glimmerT_62466-T1 fails validation.
(GTG)	 AG	1677-1817	GT	AAG
(GAC)	 AG	2500-2577	GT	AGG
(CCC)	 AG	2907-2955	GA	AGG
-recovered GlimmerHMM_glimmerT_62466-T1, terminal, 2907, 2955
-recovered GlimmerHMM_glimmerT_62466-T1, internal, 1677, 1817
-recovered GlimmerHMM_glimmerT_62466-T1, internal, 2500, 2577
Couldn't classify 253, 292
Sorry, prediction Augustus_model.g41525.t1 fails validation.
(GAC)	 AG	253-292	GT	AGG
(ACC)	 AG	1266-1320	GT	AGG
(GTG)	 AG	1677-1817	GT	AAG
(GAC)	 AG	2500-2577	GT	AGG
(TTT)	 AG	2748-2955	GA	AGG
-recovered Augustus_model.g41525.t1, terminal, 2748, 2955
-recovered Augustus_model.g41525.t1, internal, 253, 292
-recovered Augustus_model.g41525.t1, internal, 1266, 1320
-recovered Augustus_model.g41525.t1, internal, 1677, 1817
-recovered Augustus_model.g41525.t1, internal, 2500, 2577
Couldn't classify 1677, 1817
Sorry, prediction snap_scaffold_1100-snap.2-T1 fails validation.
(GTG)	 AG	1677-1817	GT	AAG
(GAC)	 AG	2500-2577	GT	AGG
(TTT)	 AG	2748-2955	GA	AGG
-recovered snap_scaffold_1100-snap.2-T1, terminal, 2748, 2955
-recovered snap_scaffold_1100-snap.2-T1, internal, 1677, 1817
-recovered snap_scaffold_1100-snap.2-T1, internal, 2500, 2577
Couldn't classify 22, 54
Sorry, prediction GeneMark_model.108896_t fails validation.
(CGT)	 AG	22-54	GT	GGG
(TCT)	 AG	794-820	GT	GAG
(TCT)	 AG	946-1006	GT	GGG
(GAC)	 AG	1699-1821	GT	AGG
-recovered GeneMark_model.108896_t, terminal, 1699, 1821
-recovered GeneMark_model.108896_t, internal, 22, 54
-recovered GeneMark_model.108896_t, internal, 794, 820
-recovered GeneMark_model.108896_t, internal, 946, 1006
-recovered GeneMark_model.108896_t, internal, 1699, 1821

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2183, rend_intergenic: 343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3297
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2183, rend_intergenic: 343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support