-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_9893191-10137540

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 106301, 106315
Sorry, prediction GeneMark_model.48962_t fails validation.
(ATG)	 GT	104006-104048	GT	CAG
(TCC)	 AG	104159-104288	GT	ATG
(AGA)	 AG	106301-106315	GT	GGG
-recovered GeneMark_model.48962_t, initial, 104006, 104048
-recovered GeneMark_model.48962_t, internal, 104159, 104288
-recovered GeneMark_model.48962_t, internal, 106301, 106315
Valid prediction for GeneMark_model.48983_t
Valid prediction for GlimmerHMM_glimmerT_28370-T1
Valid prediction for GeneMark_model.48988_t
Valid prediction for GlimmerHMM_glimmerT_28358-T1
Valid prediction for GeneMark_model.48949_t
Valid prediction for GeneMark_model.48968_t
Valid prediction for snap_scaffold_11-snap.2269-T1
Valid prediction for GeneMark_model.48954_t
Valid prediction for snap_scaffold_11-snap.2277-T1
Valid prediction for snap_scaffold_11-snap.2281-T1
Valid prediction for GeneMark_model.48974_t
Valid prediction for GlimmerHMM_glimmerT_28352-T1
Valid prediction for Augustus_model.g18917.t1
Valid prediction for GlimmerHMM_glimmerT_28366-T1
Valid prediction for snap_scaffold_11-snap.2273-T1
Valid prediction for snap_scaffold_11-snap.2265-T1
Valid prediction for GlimmerHMM_glimmerT_28355-T1
Valid prediction for Augustus_model.g18925.t1
Valid prediction for snap_scaffold_11-snap.2294-T1
Couldn't classify 24739, 24796
Couldn't classify 26705, 26724
Sorry, prediction pasa_asmbl_5880.p1 fails validation.
(ATC)	 CT	24739-24796	GT	AGG
(CGG)	 AG	25130-25228	GT	GGG
(GTA)	 AG	25384-25532	GT	AGG
(GGT)	 AG	25652-25731	GT	AGG
(TGG)	 AG	26195-26284	GT	AGG
(GTT)	 AG	26385-26524	GT	GGG
(GGT)	 AG	26705-26724	GG	TGG
-recovered pasa_asmbl_5880.p1, internal, 25130, 25228
-recovered pasa_asmbl_5880.p1, internal, 25384, 25532
-recovered pasa_asmbl_5880.p1, internal, 25652, 25731
-recovered pasa_asmbl_5880.p1, internal, 26195, 26284
-recovered pasa_asmbl_5880.p1, internal, 26385, 26524
Valid prediction for GeneMark_model.48976_t
Valid prediction for GeneMark_model.48945_t
Valid prediction for pasa_asmbl_5883.p1
Valid prediction for snap_scaffold_11-snap.2271-T1
Valid prediction for HiQ_model.g18919.t1
Valid prediction for snap_scaffold_11-snap.2295-T1
Valid prediction for snap_scaffold_11-snap.2262-T1
Valid prediction for GeneMark_model.48952_t
Valid prediction for GeneMark_model.48964_t
Valid prediction for snap_scaffold_11-snap.2261-T1
Valid prediction for GeneMark_model.48948_t
Couldn't classify 65198, 65287
Sorry, prediction pasa_asmbl_6310.p1 fails validation.
(ATG)	 GA	59153-59429	GT	AGG
(GTG)	 AG	59759-59910	GT	AGG
(GTA)	 AG	60479-60547	GT	AGG
(GTG)	 AG	60801-60925	GT	CGG
(CCT)	 AG	61356-61404	GT	AGG
(CTG)	 AG	61914-62050	GT	AAG
(GTT)	 AG	62359-62542	GT	AGG
(CAC)	 AG	63364-63456	GT	AGG
(ATC)	 AG	65198-65287	GT	CGG
-recovered pasa_asmbl_6310.p1, initial, 59153, 59429
-recovered pasa_asmbl_6310.p1, internal, 59759, 59910
-recovered pasa_asmbl_6310.p1, internal, 60479, 60547
-recovered pasa_asmbl_6310.p1, internal, 60801, 60925
-recovered pasa_asmbl_6310.p1, internal, 61356, 61404
-recovered pasa_asmbl_6310.p1, internal, 61914, 62050
-recovered pasa_asmbl_6310.p1, internal, 62359, 62542
-recovered pasa_asmbl_6310.p1, internal, 63364, 63456
-recovered pasa_asmbl_6310.p1, internal, 65198, 65287
Valid prediction for GlimmerHMM_glimmerT_28368-T1
Valid prediction for snap_scaffold_11-snap.2268-T1
Couldn't classify 27114, 27229
Couldn't classify 29259, 29330
Sorry, prediction pasa_asmbl_5881.p1 fails validation.
(GGG)	 TG	27114-27229	GT	AGG
(CGA)	 AG	27343-27425	GT	AGG
(ATA)	 AG	27685-27749	GT	AGG
(GCA)	 AG	27870-27960	GT	AGG
(ACC)	 AG	28086-28207	GT	TTG
(TCA)	 AG	28488-28698	GT	TGG
(GTA)	 AG	29017-29114	GT	TGG
(TCT)	 AG	29259-29330	CT	ACC
-recovered pasa_asmbl_5881.p1, internal, 27343, 27425
-recovered pasa_asmbl_5881.p1, internal, 27685, 27749
-recovered pasa_asmbl_5881.p1, internal, 27870, 27960
-recovered pasa_asmbl_5881.p1, internal, 28086, 28207
-recovered pasa_asmbl_5881.p1, internal, 28488, 28698
-recovered pasa_asmbl_5881.p1, internal, 29017, 29114
Valid prediction for GlimmerHMM_glimmerT_28349-T1
Valid prediction for GlimmerHMM_glimmerT_28351-T1
Valid prediction for GeneMark_model.48959_t
Valid prediction for snap_scaffold_11-snap.2292-T1
Valid prediction for GeneMark_model.48956_t
Valid prediction for snap_scaffold_11-snap.2252-T1
Valid prediction for GeneMark_model.48950_t
Valid prediction for snap_scaffold_11-snap.2286-T1
Valid prediction for CodingQuarry_transcript_8187-T1
Valid prediction for snap_scaffold_11-snap.2288-T1
Valid prediction for snap_scaffold_11-snap.2259-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.48980_t
Valid prediction for snap_scaffold_11-snap.2255-T1
Valid prediction for HiQ_model.g18921.t1
Valid prediction for CodingQuarry_transcript_8188-T1
Valid prediction for GeneMark_model.48975_t
Valid prediction for GeneMark_model.48985_t
Valid prediction for snap_scaffold_11-snap.2291-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.48955_t
Valid prediction for snap_scaffold_11-snap.2270-T1
Couldn't classify 171252, 171289
Sorry, prediction pasa_asmbl_6951.p1 fails validation.
(CCA)	 TC	171252-171289	GT	GTG
(CTG)	 AG	172011-172137	GT	TGG
(GGT)	 AG	172228-172263	GT	AGG
(GCT)	 AG	173155-173324	GT	CTG
(CTG)	 AG	173468-173594	GT	CGG
(AAT)	 AG	173763-173908	GT	GTG
(ATG)	 AG	174763-174889	GT	AGG
(GAA)	 AG	175045-175074	GT	AGG
(GTA)	 AG	175312-175424	GT	AGG
(CTG)	 AG	175685-175817	GT	ATG
(GAG)	 AG	176000-176139	GT	ATG
(GTG)	 AG	176403-176526	GT	AGG
(AAG)	 AG	176676-176834	GT	AGG
(CTG)	 AG	177189-177351	GT	AGG
(GTG)	 AG	177659-177747	TG	AAT
add_exon() Sorry, pasa_asmbl_6951.p1 174763-174889-initial-1 is invalid.
-recovered pasa_asmbl_6951.p1, initial, 174763, 174889
-recovered pasa_asmbl_6951.p1, terminal, 177659, 177747
-recovered pasa_asmbl_6951.p1, internal, 172011, 172137
-recovered pasa_asmbl_6951.p1, internal, 172228, 172263
-recovered pasa_asmbl_6951.p1, internal, 173155, 173324
-recovered pasa_asmbl_6951.p1, internal, 173468, 173594
-recovered pasa_asmbl_6951.p1, internal, 173763, 173908
-recovered pasa_asmbl_6951.p1, internal, 174763, 174889
-recovered pasa_asmbl_6951.p1, internal, 175045, 175074
-recovered pasa_asmbl_6951.p1, internal, 175312, 175424
-recovered pasa_asmbl_6951.p1, internal, 175685, 175817
-recovered pasa_asmbl_6951.p1, internal, 176000, 176139
-recovered pasa_asmbl_6951.p1, internal, 176403, 176526
-recovered pasa_asmbl_6951.p1, internal, 176676, 176834
-recovered pasa_asmbl_6951.p1, internal, 177189, 177351
Valid prediction for snap_scaffold_11-snap.2275-T1
Valid prediction for GlimmerHMM_glimmerT_28350-T1
Valid prediction for GeneMark_model.48965_t
Valid prediction for GeneMark_model.48957_t
Valid prediction for snap_scaffold_11-snap.2282-T1
Valid prediction for CodingQuarry_transcript_8191-T1
Valid prediction for Augustus_model.g18929.t1
Valid prediction for GeneMark_model.48967_t
Valid prediction for snap_scaffold_11-snap.2253-T1
Valid prediction for snap_scaffold_11-snap.2293-T1
Valid prediction for snap_scaffold_11-snap.2283-T1
Valid prediction for GlimmerHMM_glimmerT_28369-T1
Valid prediction for HiQ_model.g18920.t1
Valid prediction for GeneMark_model.48969_t
Valid prediction for GlimmerHMM_glimmerT_28363-T1
Valid prediction for GeneMark_model.48982_t
Valid prediction for GlimmerHMM_glimmerT_28362-T1
Valid prediction for Augustus_model.g18922.t1
Valid prediction for GlimmerHMM_glimmerT_28364-T1
Valid prediction for GlimmerHMM_glimmerT_28365-T1
Valid prediction for GeneMark_model.48978_t
Valid prediction for GlimmerHMM_glimmerT_28357-T1
Valid prediction for snap_scaffold_11-snap.2254-T1
Valid prediction for snap_scaffold_11-snap.2263-T1
Valid prediction for HiQ_model.g18918.t1
Valid prediction for snap_scaffold_11-snap.2276-T1
Valid prediction for GlimmerHMM_glimmerT_28359-T1
Valid prediction for snap_scaffold_11-snap.2258-T1
Valid prediction for GeneMark_model.48947_t
Valid prediction for GeneMark_model.48972_t
Valid prediction for GeneMark_model.48981_t
Valid prediction for GeneMark_model.48984_t
Valid prediction for Augustus_model.g18926.t1
Valid prediction for snap_scaffold_11-snap.2267-T1
Valid prediction for GlimmerHMM_glimmerT_28360-T1
Valid prediction for GeneMark_model.48989_t
Valid prediction for GeneMark_model.48977_t
Valid prediction for snap_scaffold_11-snap.2272-T1
Valid prediction for snap_scaffold_11-snap.2280-T1
Valid prediction for GeneMark_model.48960_t
Valid prediction for CodingQuarry_transcript_8190-T1
Valid prediction for GlimmerHMM_glimmerT_28353-T1
Valid prediction for snap_scaffold_11-snap.2257-T1
Valid prediction for GeneMark_model.48987_t
Couldn't classify 185583, 185690
Sorry, prediction pasa_asmbl_6948.p1 fails validation.
(CAA)	 AA	185583-185690	GT	AGG
(GTC)	 AG	186076-186235	GT	AGG
(GTG)	 AG	186382-186480	GT	AGG
(ACT)	 AG	186584-186680	GC	GGG
(TGC)	 AG	186770-186931	GT	CTG
(AGC)	 AG	187216-187391	GT	CGG
(GTG)	 AG	187782-187894	GT	AGG
(GAG)	 AG	188270-188462	GT	CGG
(GCC)	 AG	188614-188731	GT	CAG
(GAA)	 AG	189004-189209	GT	AGG
(GTC)	 AG	190310-190527	GA	GAG
-recovered pasa_asmbl_6948.p1, terminal, 190310, 190527
-recovered pasa_asmbl_6948.p1, internal, 186076, 186235
-recovered pasa_asmbl_6948.p1, internal, 186382, 186480
-recovered pasa_asmbl_6948.p1, internal, 186584, 186680
-recovered pasa_asmbl_6948.p1, internal, 186770, 186931
-recovered pasa_asmbl_6948.p1, internal, 187216, 187391
-recovered pasa_asmbl_6948.p1, internal, 187782, 187894
-recovered pasa_asmbl_6948.p1, internal, 188270, 188462
-recovered pasa_asmbl_6948.p1, internal, 188614, 188731
-recovered pasa_asmbl_6948.p1, internal, 189004, 189209
Valid prediction for GeneMark_model.48979_t
Valid prediction for GeneMark_model.48966_t
Couldn't classify 198980, 199207
Couldn't classify 200124, 200158
Sorry, prediction pasa_asmbl_6947.p1 fails validation.
(GCA)	 CG	198980-199207	GT	GGG
(AAA)	 AG	199381-199503	GT	AGG
(ATC)	 AG	199645-199798	GT	GGG
(CCC)	 AG	200124-200158	CG	AGC
-recovered pasa_asmbl_6947.p1, internal, 199381, 199503
-recovered pasa_asmbl_6947.p1, internal, 199645, 199798
Valid prediction for snap_scaffold_11-snap.2285-T1
Couldn't classify 131465, 131539
Sorry, prediction pasa_asmbl_6952.p1 fails validation.
(ACC)	 AT	131465-131539	GT	AGG
(GTG)	 AG	131684-132180	GT	AGG
(GCT)	 AG	132366-132500	GT	CGG
(GTT)	 AG	132634-132842	GT	AGG
(ACT)	 AG	135670-135799	GT	AGG
(CCC)	 AG	135900-136032	GT	AGG
(ATT)	 AG	136239-136352	GT	AAG
(GAT)	 AG	136504-136668	TC	AAT
-recovered pasa_asmbl_6952.p1, terminal, 136504, 136668
-recovered pasa_asmbl_6952.p1, internal, 131684, 132180
-recovered pasa_asmbl_6952.p1, internal, 132366, 132500
-recovered pasa_asmbl_6952.p1, internal, 132634, 132842
-recovered pasa_asmbl_6952.p1, internal, 135670, 135799
-recovered pasa_asmbl_6952.p1, internal, 135900, 136032
-recovered pasa_asmbl_6952.p1, internal, 136239, 136352
Valid prediction for snap_scaffold_11-snap.2290-T1
Valid prediction for GeneMark_model.48953_t
Valid prediction for Augustus_model.g18927.t1
Valid prediction for GlimmerHMM_glimmerT_28356-T1
Valid prediction for Augustus_model.g18924.t1
Valid prediction for snap_scaffold_11-snap.2279-T1
Valid prediction for GeneMark_model.48951_t
Valid prediction for GeneMark_model.48958_t
Valid prediction for snap_scaffold_11-snap.2260-T1
Valid prediction for pasa_asmbl_7324.p1
Valid prediction for GlimmerHMM_glimmerT_28354-T1
Valid prediction for snap_scaffold_11-snap.2284-T1
Couldn't classify 127117, 127243
Couldn't classify 128957, 129074
Sorry, prediction pasa_asmbl_6955.p2 fails validation.
(TTC)	 AG	127117-127243	GT	AGG
(TTC)	 AG	127440-127548	GT	GGG
(TCA)	 AG	128957-129074	CA	ACC
-recovered pasa_asmbl_6955.p2, internal, 127117, 127243
-recovered pasa_asmbl_6955.p2, internal, 127440, 127548
Valid prediction for GeneMark_model.48973_t
Valid prediction for snap_scaffold_11-snap.2266-T1
Couldn't classify 117672, 117742
Couldn't classify 121901, 121979
Sorry, prediction pasa_asmbl_6957.p1 fails validation.
(TTT)	 GT	117672-117742	GT	CTG
(GCG)	 AG	118953-119122	GT	TGG
(AGG)	 AG	121359-121476	GT	AAG
(TAA)	 AG	121901-121979	AC	AGA
-recovered pasa_asmbl_6957.p1, internal, 118953, 119122
-recovered pasa_asmbl_6957.p1, internal, 121359, 121476
Valid prediction for snap_scaffold_11-snap.2264-T1
Valid prediction for snap_scaffold_11-snap.2256-T1
Valid prediction for GeneMark_model.48971_t
Valid prediction for Augustus_model.g18928.t1
Valid prediction for Augustus_model.g18923.t1
Valid prediction for snap_scaffold_11-snap.2287-T1
Valid prediction for GeneMark_model.48946_t
Valid prediction for Augustus_model.g18916.t1
Valid prediction for GeneMark_model.48970_t
Valid prediction for snap_scaffold_11-snap.2274-T1
Valid prediction for GeneMark_model.48963_t
Valid prediction for snap_scaffold_11-snap.2289-T1
Valid prediction for snap_scaffold_11-snap.2278-T1
Valid prediction for GlimmerHMM_glimmerT_28361-T1
Couldn't classify 123404, 123674
Couldn't classify 126086, 126126
Sorry, prediction pasa_asmbl_6956.p2 fails validation.
(CGG)	 CT	123404-123674	GT	GGG
(CCA)	 AG	123955-124230	GT	AGG
(TAA)	 AG	126086-126126	GA	TGG
-recovered pasa_asmbl_6956.p2, internal, 123955, 124230
Valid prediction for GlimmerHMM_glimmerT_28367-T1
Valid prediction for GeneMark_model.48986_t
Couldn't classify 130721, 131326
Sorry, prediction pasa_asmbl_6954.p2 fails validation.
(CGG)	 AA	130721-131326	CC	GCC

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 203798, rend_intergenic: 203795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34637, rend_intergenic: 28109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45392, rend_intergenic: 37470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112784, rend_intergenic: 107683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119558, rend_intergenic: 116833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126928, rend_intergenic: 122346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160742, rend_intergenic: 157384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161691, rend_intergenic: 161250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200157, rend_intergenic: 198146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204442, rend_intergenic: 201305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211534, rend_intergenic: 210727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227268, rend_intergenic: 223928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 244350
-exon list size: 605


building trellis

0.2    
0.3    
0.5    
0.7    
0.8    
1.0    
1.2    
1.3    
1.5    
1.6    
1.8    
2.0    
2.1    
2.3    
2.5    
2.6    
2.8    
3.0    
3.1    
3.3    
3.5    
3.6    
3.8    
4.0    
4.1    
4.3    
4.4    
4.6    
4.8    
4.9    
5.1    
5.3    
5.4    
5.6    
5.8    
5.9    
6.1    
6.3    
6.4    
6.6    
6.8    
6.9    
7.1    
7.2    
7.4    
7.6    
7.7    
7.9    
8.1    
8.2    
8.4    
8.6    
8.7    
8.9    
9.1    
9.2    
9.4    
9.6    
9.7    
9.9    
10.0    
10.2    
10.4    
10.5    
10.7    
10.9    
11.0    
11.2    
11.4    
11.5    
11.7    
11.9    
12.0    
12.2    
12.4    
12.5    
12.7    
12.9    
13.0    
13.2    
13.3    
13.5    
13.7    
13.8    
14.0    
14.2    
14.3    
14.5    
14.7    
14.8    
15.0    
15.2    
15.3    
15.5    
15.7    
15.8    
16.0    
16.1    
16.3    
16.5    
16.6    
16.8    
17.0    
17.1    
17.3    
17.5    
17.6    
17.8    
18.0    
18.1    
18.3    
18.5    
18.6    
18.8    
18.9    
19.1    
19.3    
19.4    
19.6    
19.8    
19.9    
20.1    
20.3    
20.4    
20.6    
20.8    
20.9    
21.1    
21.3    
21.4    
21.6    
21.7    
21.9    
22.1    
22.2    
22.4    
22.6    
22.7    
22.9    
23.1    
23.2    
23.4    
23.6    
23.7    
23.9    
24.1    
24.2    
24.4    
24.5    
24.7    
24.9    
25.0    
25.2    
25.4    
25.5    
25.7    
25.9    
26.0    
26.2    
26.4    
26.5    
26.7    
26.9    
27.0    
27.2    
27.3    
27.5    
27.7    
27.8    
28.0    
28.2    
28.3    
28.5    
28.7    
28.8    
29.0    
29.2    
29.3    
29.5    
29.7    
29.8    
30.0    
30.1    
30.3    
30.5    
30.6    
30.8    
31.0    
31.1    
31.3    
31.5    
31.6    
31.8    
32.0    
32.1    
32.3    
32.5    
32.6    
32.8    
32.9    
33.1    
33.3    
33.4    
33.6    
33.8    
33.9    
34.1    
34.3    
34.4    
34.6    
34.8    
34.9    
35.1    
35.3    
35.4    
35.6    
35.7    
35.9    
36.1    
36.2    
36.4    
36.6    
36.7    
36.9    
37.1    
37.2    
37.4    
37.6    
37.7    
37.9    
38.1    
38.2    
38.4    
38.6    
38.7    
38.9    
39.0    
39.2    
39.4    
39.5    
39.7    
39.9    
40.0    
40.2    
40.4    
40.5    
40.7    
40.9    
41.0    
41.2    
41.4    
41.5    
41.7    
41.8    
42.0    
42.2    
42.3    
42.5    
42.7    
42.8    
43.0    
43.2    
43.3    
43.5    
43.7    
43.8    
44.0    
44.2    
44.3    
44.5    
44.6    
44.8    
45.0    
45.1    
45.3    
45.5    
45.6    
45.8    
46.0    
46.1    
46.3    
46.5    
46.6    
46.8    
47.0    
47.1    
47.3    
47.4    
47.6    
47.8    
47.9    
48.1    
48.3    
48.4    
48.6    
48.8    
48.9    
49.1    
49.3    
49.4    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.6    
50.7    
50.9    
51.1    
51.2    
51.4    
51.6    
51.7    
51.9    
52.1    
52.2    
52.4    
52.6    
52.7    
52.9    
53.0    
53.2    
53.4    
53.5    
53.7    
53.9    
54.0    
54.2    
54.4    
54.5    
54.7    
54.9    
55.0    
55.2    
55.4    
55.5    
55.7    
55.8    
56.0    
56.2    
56.3    
56.5    
56.7    
56.8    
57.0    
57.2    
57.3    
57.5    
57.7    
57.8    
58.0    
58.2    
58.3    
58.5    
58.6    
58.8    
59.0    
59.1    
59.3    
59.5    
59.6    
59.8    
60.0    
60.1    
60.3    
60.5    
60.6    
60.8    
61.0    
61.1    
61.3    
61.4    
61.6    
61.8    
61.9    
62.1    
62.3    
62.4    
62.6    
62.8    
62.9    
63.1    
63.3    
63.4    
63.6    
63.8    
63.9    
64.1    
64.3    
64.4    
64.6    
64.7    
64.9    
65.1    
65.2    
65.4    
65.6    
65.7    
65.9    
66.1    
66.2    
66.4    
66.6    
66.7    
66.9    
67.1    
67.2    
67.4    
67.5    
67.7    
67.9    
68.0    
68.2    
68.4    
68.5    
68.7    
68.9    
69.0    
69.2    
69.4    
69.5    
69.7    
69.9    
70.0    
70.2    
70.3    
70.5    
70.7    
70.8    
71.0    
71.2    
71.3    
71.5    
71.7    
71.8    
72.0    
72.2    
72.3    
72.5    
72.7    
72.8    
73.0    
73.1    
73.3    
73.5    
73.6    
73.8    
74.0    
74.1    
74.3    
74.5    
74.6    
74.8    
75.0    
75.1    
75.3    
75.5    
75.6    
75.8    
75.9    
76.1    
76.3    
76.4    
76.6    
76.8    
76.9    
77.1    
77.3    
77.4    
77.6    
77.8    
77.9    
78.1    
78.3    
78.4    
78.6    
78.7    
78.9    
79.1    
79.2    
79.4    
79.6    
79.7    
79.9    
80.1    
80.2    
80.4    
80.6    
80.7    
80.9    
81.1    
81.2    
81.4    
81.5    
81.7    
81.9    
82.0    
82.2    
82.4    
82.5    
82.7    
82.9    
83.0    
83.2    
83.4    
83.5    
83.7    
83.9    
84.0    
84.2    
84.3    
84.5    
84.7    
84.8    
85.0    
85.2    
85.3    
85.5    
85.7    
85.8    
86.0    
86.2    
86.3    
86.5    
86.7    
86.8    
87.0    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.1    
88.3    
88.5    
88.6    
88.8    
89.0    
89.1    
89.3    
89.5    
89.6    
89.8    
90.0    
90.1    
90.3    
90.4    
90.6    
90.8    
90.9    
91.1    
91.3    
91.4    
91.6    
91.8    
91.9    
92.1    
92.3    
92.4    
92.6    
92.8    
92.9    
93.1    
93.2    
93.4    
93.6    
93.7    
93.9    
94.1    
94.2    
94.4    
94.6    
94.7    
94.9    
95.1    
95.2    
95.4    
95.6    
95.7    
95.9    
96.0    
96.2    
96.4    
96.5    
96.7    
96.9    
97.0    
97.2    
97.4    
97.5    
97.7    
97.9    
98.0    
98.2    
98.4    
98.5    
98.7    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 27 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 203798, rend_intergenic: 203795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34637, rend_intergenic: 28109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45392, rend_intergenic: 37470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112784, rend_intergenic: 107683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119558, rend_intergenic: 116833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126928, rend_intergenic: 122346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160742, rend_intergenic: 157384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161691, rend_intergenic: 161250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200157, rend_intergenic: 198146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204442, rend_intergenic: 201305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211534, rend_intergenic: 210727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227268, rend_intergenic: 223928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11418
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support