-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_9002655-9203473 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g18824.t1 Couldn't classify 79682, 79876 Sorry, prediction pasa_asmbl_5820.p1 fails validation. (ATG) AC 78798-78881 GT AGG (GTG) AG 79133-79489 GT AGG (GAA) AG 79682-79876 GC GGG -recovered pasa_asmbl_5820.p1, initial, 78798, 78881 -recovered pasa_asmbl_5820.p1, internal, 79133, 79489 -recovered pasa_asmbl_5820.p1, internal, 79682, 79876 Valid prediction for CodingQuarry_transcript_8167-T1 Valid prediction for pasa_asmbl_5813.p1 Valid prediction for pasa_asmbl_5812.p1 Valid prediction for snap_scaffold_11-snap.2086-T1 Valid prediction for pasa_asmbl_5839.p1 Valid prediction for snap_scaffold_11-snap.2083-T1 Valid prediction for GeneMark_model.48758_t Valid prediction for GlimmerHMM_glimmerT_28226-T1 Valid prediction for GeneMark_model.48767_t Valid prediction for Augustus_model.g18822.t1 Valid prediction for GlimmerHMM_glimmerT_28207-T1 Valid prediction for GlimmerHMM_glimmerT_28227-T1 Valid prediction for snap_scaffold_11-snap.2075-T1 Valid prediction for snap_scaffold_11-snap.2063-T1 Valid prediction for GeneMark_model.48765_t Couldn't classify 11742, 11786 Sorry, prediction pasa_asmbl_5811.p2 fails validation. (CTG) AC 11742-11786 GT AGG (GGA) AG 11952-12030 GT AGG (GCT) AG 12237-12353 GT CAG (GGG) AG 12442-12500 GT AGG (TGG) AG 12591-12617 AT AGA -recovered pasa_asmbl_5811.p2, terminal, 12591, 12617 -recovered pasa_asmbl_5811.p2, internal, 11952, 12030 -recovered pasa_asmbl_5811.p2, internal, 12237, 12353 -recovered pasa_asmbl_5811.p2, internal, 12442, 12500 Valid prediction for snap_scaffold_11-snap.2066-T1 Valid prediction for GeneMark_model.48740_t Valid prediction for Augustus_model.g18828.t1 Valid prediction for GlimmerHMM_glimmerT_28206-T1 Valid prediction for GlimmerHMM_glimmerT_28241-T1 Valid prediction for GeneMark_model.48750_t Valid prediction for snap_scaffold_11-snap.2056-T1 Valid prediction for CodingQuarry_transcript_8172-T1 Valid prediction for snap_scaffold_11-snap.2090-T1 Valid prediction for GlimmerHMM_glimmerT_28223-T1 Valid prediction for GlimmerHMM_glimmerT_28220-T1 Valid prediction for GlimmerHMM_glimmerT_28208-T1 Valid prediction for HiQ_model.g18839.t1 Valid prediction for pasa_asmbl_5833.p1 Valid prediction for snap_scaffold_11-snap.2088-T1 Valid prediction for GlimmerHMM_glimmerT_28245-T1 Valid prediction for GeneMark_model.48748_t Valid prediction for GlimmerHMM_glimmerT_28212-T1 Valid prediction for GlimmerHMM_glimmerT_28218-T1 Valid prediction for CodingQuarry_transcript_8166-T1 Valid prediction for GeneMark_model.48770_t Couldn't classify 76246, 76331 Couldn't classify 77866, 77965 Sorry, prediction pasa_asmbl_5818.p1 fails validation. (TTA) TG 76246-76331 GT AAG (GGA) AG 76622-76713 GT TAG (GTC) AG 77147-77388 GT AGG (GTG) AG 77527-77702 GT AGG (TGT) AG 77866-77965 GG TGG -recovered pasa_asmbl_5818.p1, terminal, 77527, 77702 -recovered pasa_asmbl_5818.p1, internal, 76622, 76713 -recovered pasa_asmbl_5818.p1, internal, 77147, 77388 -recovered pasa_asmbl_5818.p1, internal, 77527, 77702 Valid prediction for GlimmerHMM_glimmerT_28239-T1 Valid prediction for HiQ_model.g18833.t1 Valid prediction for HiQ_model.g18836.t1 Valid prediction for snap_scaffold_11-snap.2089-T1 Valid prediction for snap_scaffold_11-snap.2071-T1 Valid prediction for HiQ_model.g18834.t1 Valid prediction for GlimmerHMM_glimmerT_28225-T1 Valid prediction for GlimmerHMM_glimmerT_28229-T1 Valid prediction for Augustus_model.g18831.t1 Valid prediction for CodingQuarry_transcript_8171-T1 Couldn't classify 93526, 93666 Couldn't classify 93900, 94103 Sorry, prediction pasa_asmbl_6239.p1 fails validation. (TTT) AA 93526-93666 GT TGG (GTG) AG 93900-94103 CT ACC Valid prediction for pasa_asmbl_5837.p1 Valid prediction for GlimmerHMM_glimmerT_28228-T1 Valid prediction for snap_scaffold_11-snap.2079-T1 Valid prediction for GlimmerHMM_glimmerT_28230-T1 Valid prediction for Augustus_model.g18826.t1 Valid prediction for snap_scaffold_11-snap.2092-T1 Valid prediction for GeneMark_model.48741_t Valid prediction for GeneMark_model.48759_t Valid prediction for HiQ_model.g18823.t1 Valid prediction for snap_scaffold_11-snap.2081-T1 Sorry, intron length (9) is less than minimum required (10) Sorry, intron length (4) is less than minimum required (10) Sorry, intron length (9) is less than minimum required (10) Valid prediction for HiQ_model.g18838.t1 Valid prediction for GlimmerHMM_glimmerT_28242-T1 Couldn't classify 60329, 60428 Sorry, prediction pasa_asmbl_5815.p1 fails validation. (ATG) CA 59364-59797 GT GGG (GTC) AG 60014-60127 GT AGG (GTT) AG 60329-60428 CA GCC -recovered pasa_asmbl_5815.p1, initial, 59364, 59797 -recovered pasa_asmbl_5815.p1, internal, 60014, 60127 Couldn't classify 83985, 84060 Couldn't classify 84241, 84348 Sorry, prediction CodingQuarry_transcript_8169-T1 fails validation. (ATG) TC 83657-83665 GT CTG (AAT) AG 83985-84060 AG CAA (AGG) TT 84241-84348 GT AGG (TGC) AG 84520-84613 GT AAG (GTA) AG 84904-84952 GG AGG -recovered CodingQuarry_transcript_8169-T1, initial, 83657, 83665 -recovered CodingQuarry_transcript_8169-T1, terminal, 84904, 84952 -recovered CodingQuarry_transcript_8169-T1, internal, 84520, 84613 Valid prediction for snap_scaffold_11-snap.2072-T1 Valid prediction for GlimmerHMM_glimmerT_28214-T1 Valid prediction for GlimmerHMM_glimmerT_28219-T1 Valid prediction for snap_scaffold_11-snap.2047-T1 Valid prediction for snap_scaffold_11-snap.2055-T1 Valid prediction for pasa_asmbl_5814.p1 Valid prediction for GlimmerHMM_glimmerT_28215-T1 Valid prediction for GlimmerHMM_glimmerT_28216-T1 Valid prediction for GeneMark_model.48757_t Valid prediction for GeneMark_model.48737_t Valid prediction for snap_scaffold_11-snap.2087-T1 Valid prediction for snap_scaffold_11-snap.2067-T1 Valid prediction for GeneMark_model.48763_t Valid prediction for snap_scaffold_11-snap.2060-T1 Valid prediction for snap_scaffold_11-snap.2077-T1 Couldn't classify 42580, 42804 Couldn't classify 43075, 43209 Sorry, prediction pasa_asmbl_6322.p1 fails validation. (CTG) AA 42580-42804 GT TGG (GCC) AG 43075-43209 CA AGC Valid prediction for snap_scaffold_11-snap.2073-T1 Valid prediction for snap_scaffold_11-snap.2057-T1 Valid prediction for GeneMark_model.48743_t Valid prediction for snap_scaffold_11-snap.2048-T1 Valid prediction for GeneMark_model.48746_t Valid prediction for GlimmerHMM_glimmerT_28231-T1 Valid prediction for GeneMark_model.48766_t Couldn't classify 120107, 120259 Sorry, prediction pasa_asmbl_5830.p1 fails validation. (TCC) CC 120107-120259 GT AGG (GGC) AG 120601-120624 GT AGG (GAG) AG 120961-121158 GT AGG (GAG) AG 121447-121651 GT AGG (GCT) AG 121818-121896 GT AGG (GAT) AG 122161-122320 GT AGG (GTG) AG 122732-122836 GT TGG (GAA) AG 122997-123188 GT AGG (GAA) AG 123352-123468 GT AGG (GCC) AG 123654-123806 GT AGG (GCG) AG 124468-124628 GT CAG (GGC) AG 124829-124997 GT AGG (CAC) AG 125657-125725 GT GGG (TTC) AG 125967-126179 GT AGG (GTG) AG 126442-126603 GT AGG (ATC) AG 126727-126858 GT GGG (AAT) AG 127137-127265 GT AGG (GGG) AG 127420-127562 GT AAG (GGA) AG 127988-128154 GT AGG (GAG) AG 128852-128976 GT AGG (GCT) AG 129276-129462 GT AGG (TCA) AG 129555-129628 GT AGG (GAT) AG 129939-130028 GT AGG (GCC) AG 130206-130343 AA AAA -recovered pasa_asmbl_5830.p1, terminal, 130206, 130343 -recovered pasa_asmbl_5830.p1, internal, 120601, 120624 -recovered pasa_asmbl_5830.p1, internal, 120961, 121158 -recovered pasa_asmbl_5830.p1, internal, 121447, 121651 -recovered pasa_asmbl_5830.p1, internal, 121818, 121896 -recovered pasa_asmbl_5830.p1, internal, 122161, 122320 -recovered pasa_asmbl_5830.p1, internal, 122732, 122836 -recovered pasa_asmbl_5830.p1, internal, 122997, 123188 -recovered pasa_asmbl_5830.p1, internal, 123352, 123468 -recovered pasa_asmbl_5830.p1, internal, 123654, 123806 -recovered pasa_asmbl_5830.p1, internal, 124468, 124628 -recovered pasa_asmbl_5830.p1, internal, 124829, 124997 -recovered pasa_asmbl_5830.p1, internal, 125657, 125725 -recovered pasa_asmbl_5830.p1, internal, 125967, 126179 -recovered pasa_asmbl_5830.p1, internal, 126442, 126603 -recovered pasa_asmbl_5830.p1, internal, 126727, 126858 -recovered pasa_asmbl_5830.p1, internal, 127137, 127265 -recovered pasa_asmbl_5830.p1, internal, 127420, 127562 -recovered pasa_asmbl_5830.p1, internal, 127988, 128154 -recovered pasa_asmbl_5830.p1, internal, 128852, 128976 -recovered pasa_asmbl_5830.p1, internal, 129276, 129462 -recovered pasa_asmbl_5830.p1, internal, 129555, 129628 -recovered pasa_asmbl_5830.p1, internal, 129939, 130028 Valid prediction for snap_scaffold_11-snap.2058-T1 Valid prediction for Augustus_model.g18818.t1 Valid prediction for HiQ_model.g18840.t1 Valid prediction for GeneMark_model.48755_t Valid prediction for Augustus_model.g18830.t1 Valid prediction for Augustus_model.g18829.t1 Valid prediction for snap_scaffold_11-snap.2069-T1 Valid prediction for GeneMark_model.48747_t Valid prediction for snap_scaffold_11-snap.2051-T1 Valid prediction for GlimmerHMM_glimmerT_28209-T1 Valid prediction for snap_scaffold_11-snap.2049-T1 Valid prediction for snap_scaffold_11-snap.2059-T1 Couldn't classify 80150, 80617 Sorry, prediction pasa_asmbl_5821.p1 fails validation. (AGC) GT 80150-80617 AA GAA Valid prediction for GeneMark_model.48752_t Valid prediction for snap_scaffold_11-snap.2061-T1 Valid prediction for GlimmerHMM_glimmerT_28235-T1 Valid prediction for CodingQuarry_transcript_8168-T1 Valid prediction for GeneMark_model.48738_t Valid prediction for pasa_asmbl_5840.p1 Valid prediction for Augustus_model.g18832.t1 Valid prediction for HiQ_model.g18821.t1 Valid prediction for GeneMark_model.48762_t Valid prediction for GlimmerHMM_glimmerT_28217-T1 Valid prediction for snap_scaffold_11-snap.2070-T1 Valid prediction for GeneMark_model.48768_t Valid prediction for GeneMark_model.48761_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_6906.p1 Couldn't classify 185422, 185469 Sorry, prediction pasa_asmbl_6886.p1 fails validation. (ATG) GC 174912-175177 GT AGG (ACT) AG 176188-178266 GT AGG (GTT) AG 178607-179120 GT GGG (GAC) AG 179233-179302 GT AGG (AGC) AG 179438-179592 GT AGG (GTA) AG 179897-179957 GT AGG (GCG) AG 180302-180604 GT AGG (GTC) AG 180747-181518 GT AGG (AGA) AG 181981-182030 GT AGG (CGG) AG 182396-182544 GT TGG (AGC) AG 182850-182984 GT AGG (ACG) AG 183106-183222 GT AGG (ACC) AG 183392-183583 GT AGG (GTG) AG 183716-183778 GT ATG (ACC) AG 184122-184241 GT AGG (TCC) AG 184689-184760 GT TGG (ATC) AG 184848-184919 GT TGG (TGG) AG 185129-185275 GT AGG (AGC) AG 185422-185469 AA AGA -recovered pasa_asmbl_6886.p1, initial, 174912, 175177 -recovered pasa_asmbl_6886.p1, internal, 176188, 178266 -recovered pasa_asmbl_6886.p1, internal, 178607, 179120 -recovered pasa_asmbl_6886.p1, internal, 179233, 179302 -recovered pasa_asmbl_6886.p1, internal, 179438, 179592 -recovered pasa_asmbl_6886.p1, internal, 179897, 179957 -recovered pasa_asmbl_6886.p1, internal, 180302, 180604 -recovered pasa_asmbl_6886.p1, internal, 180747, 181518 -recovered pasa_asmbl_6886.p1, internal, 181981, 182030 -recovered pasa_asmbl_6886.p1, internal, 182396, 182544 -recovered pasa_asmbl_6886.p1, internal, 182850, 182984 -recovered pasa_asmbl_6886.p1, internal, 183106, 183222 -recovered pasa_asmbl_6886.p1, internal, 183392, 183583 -recovered pasa_asmbl_6886.p1, internal, 183716, 183778 -recovered pasa_asmbl_6886.p1, internal, 184122, 184241 -recovered pasa_asmbl_6886.p1, internal, 184689, 184760 -recovered pasa_asmbl_6886.p1, internal, 184848, 184919 -recovered pasa_asmbl_6886.p1, internal, 185129, 185275 Valid prediction for snap_scaffold_11-snap.2050-T1 Valid prediction for Augustus_model.g18841.t1 Valid prediction for snap_scaffold_11-snap.2078-T1 Valid prediction for GlimmerHMM_glimmerT_28222-T1 Valid prediction for GlimmerHMM_glimmerT_28210-T1 Valid prediction for GeneMark_model.48744_t Valid prediction for HiQ_model.g18843.t1 Valid prediction for GlimmerHMM_glimmerT_28221-T1 Valid prediction for GlimmerHMM_glimmerT_28233-T1 Valid prediction for snap_scaffold_11-snap.2084-T1 Valid prediction for HiQ_model.g18819.t1 Valid prediction for GeneMark_model.48754_t Valid prediction for snap_scaffold_11-snap.2080-T1 Valid prediction for GeneMark_model.48756_t Valid prediction for Augustus_model.g18837.t1 Valid prediction for GlimmerHMM_glimmerT_28238-T1 Valid prediction for Augustus_model.g18820.t1 Valid prediction for GeneMark_model.48769_t Valid prediction for GlimmerHMM_glimmerT_28234-T1 Valid prediction for snap_scaffold_11-snap.2065-T1 Valid prediction for Augustus_model.g18842.t1 Couldn't classify 66853, 67101 Sorry, prediction pasa_asmbl_6899.p1 fails validation. (GGT) CA 66853-67101 GT TGG (GAG) AG 67214-67379 GT AGG (GTC) AG 67466-67523 GT CAG (GAT) AG 67917-68016 GT AGG (ACA) AG 68273-68317 TG GAT -recovered pasa_asmbl_6899.p1, terminal, 68273, 68317 -recovered pasa_asmbl_6899.p1, internal, 67214, 67379 -recovered pasa_asmbl_6899.p1, internal, 67466, 67523 -recovered pasa_asmbl_6899.p1, internal, 67917, 68016 Valid prediction for GlimmerHMM_glimmerT_28232-T1 Valid prediction for GeneMark_model.48751_t Couldn't classify 10302, 10554 Couldn't classify 11778, 11996 Sorry, prediction pasa_asmbl_6905.p1 fails validation. (CCC) CG 10302-10554 GT TGG (GGA) AG 10780-10943 GT ACG (GTA) AG 11778-11996 TG AGT -recovered pasa_asmbl_6905.p1, internal, 10780, 10943 Valid prediction for GlimmerHMM_glimmerT_28213-T1 Valid prediction for GlimmerHMM_glimmerT_28236-T1 Valid prediction for GeneMark_model.48749_t Valid prediction for GeneMark_model.48764_t Valid prediction for Augustus_model.g18835.t1 Couldn't classify 127363, 127681 Sorry, prediction pasa_asmbl_6892.p1 fails validation. (GAA) TG 127363-127681 GT GGG (ACT) AG 128345-128454 GT AGG (TCT) AG 128680-128819 GT AGG (CTG) AG 129181-129265 GT CGG (ATA) AG 129653-129803 GT AGG (ATC) AG 130206-130291 GT GGG (CTG) AG 130518-130641 GT GGG (GAG) AG 132139-132335 GT AGG (GGC) AG 132541-132720 GT TTG (GTA) AG 133502-133796 GT GAG (GCA) AG 134103-134242 GT AGG (GTC) AG 134617-134719 GT AGG (CCG) AG 135016-135344 CC GAC -recovered pasa_asmbl_6892.p1, terminal, 135016, 135344 -recovered pasa_asmbl_6892.p1, internal, 128345, 128454 -recovered pasa_asmbl_6892.p1, internal, 128680, 128819 -recovered pasa_asmbl_6892.p1, internal, 129181, 129265 -recovered pasa_asmbl_6892.p1, internal, 129653, 129803 -recovered pasa_asmbl_6892.p1, internal, 130206, 130291 -recovered pasa_asmbl_6892.p1, internal, 130518, 130641 -recovered pasa_asmbl_6892.p1, internal, 132139, 132335 -recovered pasa_asmbl_6892.p1, internal, 132541, 132720 -recovered pasa_asmbl_6892.p1, internal, 133502, 133796 -recovered pasa_asmbl_6892.p1, internal, 134103, 134242 -recovered pasa_asmbl_6892.p1, internal, 134617, 134719 Valid prediction for snap_scaffold_11-snap.2093-T1 Valid prediction for CodingQuarry_transcript_8173-T1 Valid prediction for snap_scaffold_11-snap.2091-T1 Valid prediction for snap_scaffold_11-snap.2074-T1 Valid prediction for GlimmerHMM_glimmerT_28237-T1 Valid prediction for GeneMark_model.48772_t Valid prediction for snap_scaffold_11-snap.2062-T1 Valid prediction for HiQ_model.g18827.t1 Valid prediction for snap_scaffold_11-snap.2054-T1 Valid prediction for snap_scaffold_11-snap.2064-T1 Valid prediction for snap_scaffold_11-snap.2052-T1 Valid prediction for snap_scaffold_11-snap.2076-T1 Valid prediction for snap_scaffold_11-snap.2053-T1 Valid prediction for GeneMark_model.48742_t Couldn't classify 62801, 63089 Couldn't classify 63248, 63342 Sorry, prediction pasa_asmbl_7264.p1 fails validation. (CTG) CC 62801-63089 GT AGG (CTG) AG 63248-63342 AC ACA Couldn't classify 18602, 18757 Sorry, prediction pasa_asmbl_6902.p1 fails validation. (GTC) AG 18602-18757 GT CTG (GAA) AG 19158-19317 GT GAG (CGG) AG 19704-19947 GT GGG (CCA) AG 20073-20188 GT AGG (GTA) AG 20579-20715 GT AGG (ATT) AG 20834-20945 GT TGG (GTG) AG 21061-21134 TT AAT -recovered pasa_asmbl_6902.p1, terminal, 21061, 21134 -recovered pasa_asmbl_6902.p1, internal, 18602, 18757 -recovered pasa_asmbl_6902.p1, internal, 19158, 19317 -recovered pasa_asmbl_6902.p1, internal, 19704, 19947 -recovered pasa_asmbl_6902.p1, internal, 20073, 20188 -recovered pasa_asmbl_6902.p1, internal, 20579, 20715 -recovered pasa_asmbl_6902.p1, internal, 20834, 20945 Valid prediction for snap_scaffold_11-snap.2082-T1 Valid prediction for GeneMark_model.48760_t Valid prediction for GlimmerHMM_glimmerT_28243-T1 Valid prediction for snap_scaffold_11-snap.2068-T1 Valid prediction for GlimmerHMM_glimmerT_28247-T1 Valid prediction for GlimmerHMM_glimmerT_28244-T1 Valid prediction for GlimmerHMM_glimmerT_28224-T1 Valid prediction for GeneMark_model.48771_t Valid prediction for GlimmerHMM_glimmerT_28240-T1 Valid prediction for GeneMark_model.48753_t Valid prediction for GlimmerHMM_glimmerT_28211-T1 Valid prediction for GlimmerHMM_glimmerT_28246-T1 Valid prediction for snap_scaffold_11-snap.2085-T1 Valid prediction for Augustus_model.g18825.t1 Valid prediction for GeneMark_model.48745_t Couldn't classify 65019, 65366 Sorry, prediction pasa_asmbl_6901.p2 fails validation. (AGA) GG 65019-65366 AG GCA -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9824, rend_intergenic: 8889 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 12904, rend_intergenic: 10367 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66224, rend_intergenic: 62506 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85768, rend_intergenic: 83767 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112671, rend_intergenic: 111678 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113611, rend_intergenic: 112913 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125893, rend_intergenic: 115594 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 133610, rend_intergenic: 132137 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140767, rend_intergenic: 133666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165122, rend_intergenic: 163172 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191082, rend_intergenic: 185812 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 12617, rend_intergenic: 12614 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 200819 -exon list size: 782 building trellis 0.1 0.3 0.4 0.5 0.6 0.8 0.9 1.0 1.1 1.3 1.4 1.5 1.7 1.8 1.9 2.0 2.2 2.3 2.4 2.6 2.7 2.8 2.9 3.1 3.2 3.3 3.4 3.6 3.7 3.8 4.0 4.1 4.2 4.3 4.5 4.6 4.7 4.8 5.0 5.1 5.2 5.4 5.5 5.6 5.7 5.9 6.0 6.1 6.2 6.4 6.5 6.6 6.8 6.9 7.0 7.1 7.3 7.4 7.5 7.7 7.8 7.9 8.0 8.2 8.3 8.4 8.5 8.7 8.8 8.9 9.1 9.2 9.3 9.4 9.6 9.7 9.8 9.9 10.1 10.2 10.3 10.5 10.6 10.7 10.8 11.0 11.1 11.2 11.4 11.5 11.6 11.7 11.9 12.0 12.1 12.2 12.4 12.5 12.6 12.8 12.9 13.0 13.1 13.3 13.4 13.5 13.6 13.8 13.9 14.0 14.2 14.3 14.4 14.5 14.7 14.8 14.9 15.1 15.2 15.3 15.4 15.6 15.7 15.8 15.9 16.1 16.2 16.3 16.5 16.6 16.7 16.8 17.0 17.1 17.2 17.3 17.5 17.6 17.7 17.9 18.0 18.1 18.2 18.4 18.5 18.6 18.8 18.9 19.0 19.1 19.3 19.4 19.5 19.6 19.8 19.9 20.0 20.2 20.3 20.4 20.5 20.7 20.8 20.9 21.0 21.2 21.3 21.4 21.6 21.7 21.8 21.9 22.1 22.2 22.3 22.4 22.6 22.7 22.8 23.0 23.1 23.2 23.3 23.5 23.6 23.7 23.9 24.0 24.1 24.2 24.4 24.5 24.6 24.7 24.9 25.0 25.1 25.3 25.4 25.5 25.6 25.8 25.9 26.0 26.1 26.3 26.4 26.5 26.7 26.8 26.9 27.0 27.2 27.3 27.4 27.6 27.7 27.8 27.9 28.1 28.2 28.3 28.4 28.6 28.7 28.8 29.0 29.1 29.2 29.3 29.5 29.6 29.7 29.8 30.0 30.1 30.2 30.4 30.5 30.6 30.7 30.9 31.0 31.1 31.2 31.4 31.5 31.6 31.8 31.9 32.0 32.1 32.3 32.4 32.5 32.7 32.8 32.9 33.0 33.2 33.3 33.4 33.5 33.7 33.8 33.9 34.1 34.2 34.3 34.4 34.6 34.7 34.8 34.9 35.1 35.2 35.3 35.5 35.6 35.7 35.8 36.0 36.1 36.2 36.4 36.5 36.6 36.7 36.9 37.0 37.1 37.2 37.4 37.5 37.6 37.8 37.9 38.0 38.1 38.3 38.4 38.5 38.6 38.8 38.9 39.0 39.2 39.3 39.4 39.5 39.7 39.8 39.9 40.1 40.2 40.3 40.4 40.6 40.7 40.8 40.9 41.1 41.2 41.3 41.5 41.6 41.7 41.8 42.0 42.1 42.2 42.3 42.5 42.6 42.7 42.9 43.0 43.1 43.2 43.4 43.5 43.6 43.8 43.9 44.0 44.1 44.3 44.4 44.5 44.6 44.8 44.9 45.0 45.2 45.3 45.4 45.5 45.7 45.8 45.9 46.0 46.2 46.3 46.4 46.6 46.7 46.8 46.9 47.1 47.2 47.3 47.4 47.6 47.7 47.8 48.0 48.1 48.2 48.3 48.5 48.6 48.7 48.9 49.0 49.1 49.2 49.4 49.5 49.6 49.7 49.9 50.0 50.1 50.3 50.4 50.5 50.6 50.8 50.9 51.0 51.1 51.3 51.4 51.5 51.7 51.8 51.9 52.0 52.2 52.3 52.4 52.6 52.7 52.8 52.9 53.1 53.2 53.3 53.4 53.6 53.7 53.8 54.0 54.1 54.2 54.3 54.5 54.6 54.7 54.8 55.0 55.1 55.2 55.4 55.5 55.6 55.7 55.9 56.0 56.1 56.2 56.4 56.5 56.6 56.8 56.9 57.0 57.1 57.3 57.4 57.5 57.7 57.8 57.9 58.0 58.2 58.3 58.4 58.5 58.7 58.8 58.9 59.1 59.2 59.3 59.4 59.6 59.7 59.8 59.9 60.1 60.2 60.3 60.5 60.6 60.7 60.8 61.0 61.1 61.2 61.4 61.5 61.6 61.7 61.9 62.0 62.1 62.2 62.4 62.5 62.6 62.8 62.9 63.0 63.1 63.3 63.4 63.5 63.6 63.8 63.9 64.0 64.2 64.3 64.4 64.5 64.7 64.8 64.9 65.1 65.2 65.3 65.4 65.6 65.7 65.8 65.9 66.1 66.2 66.3 66.5 66.6 66.7 66.8 67.0 67.1 67.2 67.3 67.5 67.6 67.7 67.9 68.0 68.1 68.2 68.4 68.5 68.6 68.8 68.9 69.0 69.1 69.3 69.4 69.5 69.6 69.8 69.9 70.0 70.2 70.3 70.4 70.5 70.7 70.8 70.9 71.0 71.2 71.3 71.4 71.6 71.7 71.8 71.9 72.1 72.2 72.3 72.4 72.6 72.7 72.8 73.0 73.1 73.2 73.3 73.5 73.6 73.7 73.9 74.0 74.1 74.2 74.4 74.5 74.6 74.7 74.9 75.0 75.1 75.3 75.4 75.5 75.6 75.8 75.9 76.0 76.1 76.3 76.4 76.5 76.7 76.8 76.9 77.0 77.2 77.3 77.4 77.6 77.7 77.8 77.9 78.1 78.2 78.3 78.4 78.6 78.7 78.8 79.0 79.1 79.2 79.3 79.5 79.6 79.7 79.8 80.0 80.1 80.2 80.4 80.5 80.6 80.7 80.9 81.0 81.1 81.2 81.4 81.5 81.6 81.8 81.9 82.0 82.1 82.3 82.4 82.5 82.7 82.8 82.9 83.0 83.2 83.3 83.4 83.5 83.7 83.8 83.9 84.1 84.2 84.3 84.4 84.6 84.7 84.8 84.9 85.1 85.2 85.3 85.5 85.6 85.7 85.8 86.0 86.1 86.2 86.4 86.5 86.6 86.7 86.9 87.0 87.1 87.2 87.4 87.5 87.6 87.8 87.9 88.0 88.1 88.3 88.4 88.5 88.6 88.8 88.9 89.0 89.2 89.3 89.4 89.5 89.7 89.8 89.9 90.1 90.2 90.3 90.4 90.6 90.7 90.8 90.9 91.1 91.2 91.3 91.5 91.6 91.7 91.8 92.0 92.1 92.2 92.3 92.5 92.6 92.7 92.9 93.0 93.1 93.2 93.4 93.5 93.6 93.8 93.9 94.0 94.1 94.3 94.4 94.5 94.6 94.8 94.9 95.0 95.2 95.3 95.4 95.5 95.7 95.8 95.9 96.0 96.2 96.3 96.4 96.6 96.7 96.8 96.9 97.1 97.2 97.3 97.4 97.6 97.7 97.8 98.0 98.1 98.2 98.3 98.5 98.6 98.7 98.9 99.0 99.1 99.2 99.4 99.5 99.6 99.7 99.9 -found 35 predictions from path traversal Error with prediction: snap lend_intergenic: 9824, rend_intergenic: 8889 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 12904, rend_intergenic: 10367 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66224, rend_intergenic: 62506 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85768, rend_intergenic: 83767 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112671, rend_intergenic: 111678 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113611, rend_intergenic: 112913 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125893, rend_intergenic: 115594 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 133610, rend_intergenic: 132137 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140767, rend_intergenic: 133666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165122, rend_intergenic: 163172 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191082, rend_intergenic: 185812 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 12617, rend_intergenic: 12614 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 33 predictions persist after filtering for low support