-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_7467210-7687320 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.48372_t Valid prediction for GeneMark_model.48405_t Valid prediction for snap_scaffold_11-snap.1746-T1 Valid prediction for GlimmerHMM_glimmerT_27975-T1 Valid prediction for GeneMark_model.48384_t Valid prediction for GeneMark_model.48409_t Valid prediction for GeneMark_model.48373_t Valid prediction for GeneMark_model.48362_t Valid prediction for GlimmerHMM_glimmerT_27972-T1 Valid prediction for GeneMark_model.48374_t Valid prediction for HiQ_model.g18654.t1 Valid prediction for GeneMark_model.48404_t Valid prediction for snap_scaffold_11-snap.1752-T1 Couldn't classify 194048, 194296 Sorry, prediction pasa_asmbl_5642.p1 fails validation. (GCA) GT 194048-194296 GT GGG (GGC) AG 194402-194521 GT AGG (TTT) AG 194609-194677 GT AGG (GAC) AG 194790-194846 GT AGG (ATC) AG 194934-195047 GT TGG (AGG) AG 195323-195433 GT AGG (GAC) AG 195570-195678 GT GGG (GTG) AG 195777-195897 GT AGG (CGA) AG 196511-196592 GT GGG (GTG) AG 196695-196818 GT AGG (GCT) AG 197144-197352 GT AGG (GCC) AG 197438-197536 GT AGG (GGT) AG 197905-198004 GT AGG (GGT) AG 198294-198415 CA AAC -recovered pasa_asmbl_5642.p1, terminal, 198294, 198415 -recovered pasa_asmbl_5642.p1, internal, 194402, 194521 -recovered pasa_asmbl_5642.p1, internal, 194609, 194677 -recovered pasa_asmbl_5642.p1, internal, 194790, 194846 -recovered pasa_asmbl_5642.p1, internal, 194934, 195047 -recovered pasa_asmbl_5642.p1, internal, 195323, 195433 -recovered pasa_asmbl_5642.p1, internal, 195570, 195678 -recovered pasa_asmbl_5642.p1, internal, 195777, 195897 -recovered pasa_asmbl_5642.p1, internal, 196511, 196592 -recovered pasa_asmbl_5642.p1, internal, 196695, 196818 -recovered pasa_asmbl_5642.p1, internal, 197144, 197352 -recovered pasa_asmbl_5642.p1, internal, 197438, 197536 -recovered pasa_asmbl_5642.p1, internal, 197905, 198004 Valid prediction for GeneMark_model.48402_t Valid prediction for snap_scaffold_11-snap.1743-T1 Valid prediction for CodingQuarry_transcript_8088-T1 Valid prediction for snap_scaffold_11-snap.1760-T1 Valid prediction for GeneMark_model.48357_t Valid prediction for HiQ_model.g18652.t1 Valid prediction for GeneMark_model.48401_t Valid prediction for snap_scaffold_11-snap.1767-T1 Valid prediction for snap_scaffold_11-snap.1748-T1 Valid prediction for GlimmerHMM_glimmerT_27974-T1 Valid prediction for snap_scaffold_11-snap.1745-T1 Valid prediction for snap_scaffold_11-snap.1769-T1 Sorry, intron length (8) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_27990-T1 Valid prediction for GeneMark_model.48382_t Valid prediction for GlimmerHMM_glimmerT_27978-T1 Valid prediction for GeneMark_model.48352_t Valid prediction for Augustus_model.g18651.t1 Valid prediction for GeneMark_model.48355_t Valid prediction for GeneMark_model.48407_t Valid prediction for GeneMark_model.48398_t Valid prediction for GlimmerHMM_glimmerT_27967-T1 Valid prediction for Augustus_model.g18642.t1 Valid prediction for GeneMark_model.48375_t Valid prediction for GlimmerHMM_glimmerT_27989-T1 Valid prediction for snap_scaffold_11-snap.1759-T1 Valid prediction for GeneMark_model.48361_t Valid prediction for snap_scaffold_11-snap.1751-T1 Valid prediction for GeneMark_model.48396_t Valid prediction for snap_scaffold_11-snap.1758-T1 Valid prediction for GeneMark_model.48388_t Valid prediction for GeneMark_model.48354_t Valid prediction for GlimmerHMM_glimmerT_27988-T1 Valid prediction for GeneMark_model.48366_t Valid prediction for GeneMark_model.48411_t Valid prediction for GeneMark_model.48394_t Valid prediction for GeneMark_model.48368_t Valid prediction for snap_scaffold_11-snap.1771-T1 Valid prediction for GeneMark_model.48381_t Valid prediction for GeneMark_model.48386_t Valid prediction for GlimmerHMM_glimmerT_27987-T1 Valid prediction for GlimmerHMM_glimmerT_27992-T1 Valid prediction for pasa_asmbl_5640.p2 Valid prediction for GlimmerHMM_glimmerT_27970-T1 Valid prediction for snap_scaffold_11-snap.1750-T1 Valid prediction for GeneMark_model.48390_t Valid prediction for snap_scaffold_11-snap.1764-T1 Valid prediction for GeneMark_model.48392_t Valid prediction for snap_scaffold_11-snap.1766-T1 Valid prediction for CodingQuarry_transcript_8090-T1 Valid prediction for snap_scaffold_11-snap.1740-T1 Valid prediction for GeneMark_model.48370_t Valid prediction for snap_scaffold_11-snap.1754-T1 Valid prediction for GlimmerHMM_glimmerT_27986-T1 Valid prediction for GlimmerHMM_glimmerT_27966-T1 Valid prediction for GlimmerHMM_glimmerT_27982-T1 Valid prediction for snap_scaffold_11-snap.1772-T1 Valid prediction for Augustus_model.g18646.t1 Valid prediction for GeneMark_model.48399_t Valid prediction for GeneMark_model.48364_t Valid prediction for GlimmerHMM_glimmerT_27968-T1 Valid prediction for snap_scaffold_11-snap.1763-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.1773-T1 Valid prediction for snap_scaffold_11-snap.1765-T1 Valid prediction for GlimmerHMM_glimmerT_27985-T1 Valid prediction for Augustus_model.g18647.t1 Valid prediction for GeneMark_model.48387_t Valid prediction for GeneMark_model.48412_t Valid prediction for GeneMark_model.48353_t Valid prediction for GeneMark_model.48385_t Couldn't classify 8207, 8284 Couldn't classify 9237, 9360 Sorry, prediction pasa_asmbl_6775.p1 fails validation. (GGA) CA 8207-8284 GT AGG (GAC) AG 8404-8608 GT AGG (CCA) AG 8798-8949 GT AGG (CTC) AG 9054-9127 GT AGG (GGA) AG 9237-9360 GT GAG -recovered pasa_asmbl_6775.p1, internal, 8404, 8608 -recovered pasa_asmbl_6775.p1, internal, 8798, 8949 -recovered pasa_asmbl_6775.p1, internal, 9054, 9127 -recovered pasa_asmbl_6775.p1, internal, 9237, 9360 Valid prediction for GlimmerHMM_glimmerT_27981-T1 Valid prediction for snap_scaffold_11-snap.1768-T1 Valid prediction for GlimmerHMM_glimmerT_27994-T1 Valid prediction for snap_scaffold_11-snap.1741-T1 Valid prediction for GeneMark_model.48371_t Valid prediction for snap_scaffold_11-snap.1770-T1 Valid prediction for GeneMark_model.48408_t Valid prediction for GeneMark_model.48377_t Valid prediction for GeneMark_model.48356_t Valid prediction for GeneMark_model.48391_t Valid prediction for GeneMark_model.48379_t Valid prediction for snap_scaffold_11-snap.1755-T1 Valid prediction for GeneMark_model.48365_t Valid prediction for GlimmerHMM_glimmerT_27976-T1 Couldn't classify 84085, 84125 Couldn't classify 84219, 84369 Sorry, prediction CodingQuarry_transcript_8085-T1 fails validation. (ATG) CC 82205-82336 GT AGG (ATC) AG 84085-84125 AG CCA (TTC) CC 84219-84369 GT AGG (GCA) AG 84662-84765 GT AAG (GTT) AG 85138-85240 GT AGG (GAC) AG 85491-85565 GT CGG (GTG) AG 86746-86832 GT AGG (ACG) AG 87050-87206 GT CGG (CTT) AG 87385-87433 GT AGG (GGG) AG 87525-87614 GT AGG (TAT) AG 88110-88285 GT AGG (GGA) AG 89612-89730 GT AGG (GAC) AG 89901-90007 GT GGG (GTC) AG 90683-90779 CC GAC -recovered CodingQuarry_transcript_8085-T1, initial, 82205, 82336 -recovered CodingQuarry_transcript_8085-T1, terminal, 90683, 90779 -recovered CodingQuarry_transcript_8085-T1, internal, 84662, 84765 -recovered CodingQuarry_transcript_8085-T1, internal, 85138, 85240 -recovered CodingQuarry_transcript_8085-T1, internal, 85491, 85565 -recovered CodingQuarry_transcript_8085-T1, internal, 86746, 86832 -recovered CodingQuarry_transcript_8085-T1, internal, 87050, 87206 -recovered CodingQuarry_transcript_8085-T1, internal, 87385, 87433 -recovered CodingQuarry_transcript_8085-T1, internal, 87525, 87614 -recovered CodingQuarry_transcript_8085-T1, internal, 88110, 88285 -recovered CodingQuarry_transcript_8085-T1, internal, 89612, 89730 -recovered CodingQuarry_transcript_8085-T1, internal, 89901, 90007 Valid prediction for snap_scaffold_11-snap.1749-T1 Valid prediction for pasa_asmbl_6760.p1 Valid prediction for GeneMark_model.48410_t Valid prediction for Augustus_model.g18655.t1 Valid prediction for GlimmerHMM_glimmerT_27973-T1 Valid prediction for Augustus_model.g18653.t1 Valid prediction for Augustus_model.g18649.t1 Valid prediction for GeneMark_model.48389_t Valid prediction for GeneMark_model.48397_t Valid prediction for GeneMark_model.48360_t Valid prediction for GeneMark_model.48363_t Valid prediction for GeneMark_model.48393_t Valid prediction for GlimmerHMM_glimmerT_27979-T1 Valid prediction for snap_scaffold_11-snap.1744-T1 Valid prediction for GeneMark_model.48400_t Valid prediction for GlimmerHMM_glimmerT_27984-T1 Valid prediction for GlimmerHMM_glimmerT_27995-T1 Valid prediction for Augustus_model.g18644.t1 Valid prediction for GlimmerHMM_glimmerT_27993-T1 Valid prediction for GeneMark_model.48359_t Valid prediction for snap_scaffold_11-snap.1742-T1 Valid prediction for GlimmerHMM_glimmerT_27971-T1 Valid prediction for GlimmerHMM_glimmerT_27977-T1 Valid prediction for snap_scaffold_11-snap.1761-T1 Valid prediction for GeneMark_model.48403_t Valid prediction for GlimmerHMM_glimmerT_27983-T1 Valid prediction for Augustus_model.g18643.t1 Valid prediction for snap_scaffold_11-snap.1756-T1 Sorry, intron length (4) is less than minimum required (10) Couldn't classify 81445, 81768 Sorry, prediction pasa_asmbl_6756.p2 fails validation. (TGT) TG 81445-81768 TT GAT Valid prediction for GeneMark_model.48367_t Valid prediction for snap_scaffold_11-snap.1757-T1 Valid prediction for GeneMark_model.48406_t Couldn't classify 84196, 84369 Sorry, prediction pasa_asmbl_6753.p1 fails validation. (CCG) CC 84196-84369 GT AGG (GCA) AG 84662-84765 GT AAG (GTT) AG 85138-85240 GT AGG (GAC) AG 85491-85565 GT CGG (GTG) AG 86746-86832 GT AGG (ACG) AG 87050-87206 GT CGG (CTT) AG 87385-87433 GT AGG (GGG) AG 87525-87614 GT AGG (TAT) AG 88110-88285 GT AGG (GGA) AG 89612-89730 GT AGG (GAC) AG 89901-90007 GT GGG (GTC) AG 90683-90779 CC GAC -recovered pasa_asmbl_6753.p1, terminal, 90683, 90779 -recovered pasa_asmbl_6753.p1, internal, 84662, 84765 -recovered pasa_asmbl_6753.p1, internal, 85138, 85240 -recovered pasa_asmbl_6753.p1, internal, 85491, 85565 -recovered pasa_asmbl_6753.p1, internal, 86746, 86832 -recovered pasa_asmbl_6753.p1, internal, 87050, 87206 -recovered pasa_asmbl_6753.p1, internal, 87385, 87433 -recovered pasa_asmbl_6753.p1, internal, 87525, 87614 -recovered pasa_asmbl_6753.p1, internal, 88110, 88285 -recovered pasa_asmbl_6753.p1, internal, 89612, 89730 -recovered pasa_asmbl_6753.p1, internal, 89901, 90007 Valid prediction for GlimmerHMM_glimmerT_27991-T1 Valid prediction for snap_scaffold_11-snap.1747-T1 Valid prediction for Augustus_model.g18650.t1 Valid prediction for Augustus_model.g18645.t1 Valid prediction for GeneMark_model.48369_t Valid prediction for snap_scaffold_11-snap.1762-T1 Valid prediction for snap_scaffold_11-snap.1774-T1 Valid prediction for GlimmerHMM_glimmerT_27980-T1 Couldn't classify 156628, 156646 Couldn't classify 161883, 162083 Sorry, prediction pasa_asmbl_6749.p1 fails validation. (ACC) TC 156628-156646 GT AGG (CGA) AG 157214-157332 GT AGG (TGT) AG 158058-158163 GT GGG (ACT) AG 158573-158745 GT GGG (TTT) AG 159386-159499 GT AGG (AGC) AG 160347-160496 GT AGG (GCT) AG 161883-162083 CA AGC -recovered pasa_asmbl_6749.p1, internal, 157214, 157332 -recovered pasa_asmbl_6749.p1, internal, 158058, 158163 -recovered pasa_asmbl_6749.p1, internal, 158573, 158745 -recovered pasa_asmbl_6749.p1, internal, 159386, 159499 -recovered pasa_asmbl_6749.p1, internal, 160347, 160496 Valid prediction for GeneMark_model.48358_t Couldn't classify 152890, 153056 Couldn't classify 154442, 154580 Sorry, prediction pasa_asmbl_6751.p1 fails validation. (CAC) AC 152890-153056 GT AGG (TGG) AG 154442-154580 CA CAC Valid prediction for GeneMark_model.48395_t Valid prediction for GeneMark_model.48383_t Couldn't classify 28954, 29301 Sorry, prediction pasa_asmbl_6769.p1 fails validation. (GGG) GC 28954-29301 GG GGG Valid prediction for GeneMark_model.48378_t Valid prediction for snap_scaffold_11-snap.1753-T1 Valid prediction for Augustus_model.g18648.t1 Valid prediction for GeneMark_model.48376_t Couldn't classify 14008, 14079 Sorry, prediction pasa_asmbl_6772.p1 fails validation. (AAG) GG 14008-14079 GT AGG (CAC) AG 14365-14568 GT AGG (GGT) AG 14690-14760 GT AAG (CGC) AG 15126-15294 GT AGG (GAT) AG 15419-15511 GT AGG (GCA) AG 15972-16146 GT GGG (AGG) AG 16663-16802 GT AGG (TAC) AG 17102-17203 GT AGG (CTG) AG 17307-17455 GT AAG (GGA) AG 17562-17690 GT GTG (CCA) AG 17794-17996 GT CGG (AGG) AG 18468-18633 GT AAG (TCC) AG 18775-18891 GT GTG (ACG) AG 19374-19488 GT TGG (CCA) AG 19618-19698 GT CGG (GGA) AG 19915-19938 TC GAT -recovered pasa_asmbl_6772.p1, terminal, 19915, 19938 -recovered pasa_asmbl_6772.p1, internal, 14365, 14568 -recovered pasa_asmbl_6772.p1, internal, 14690, 14760 -recovered pasa_asmbl_6772.p1, internal, 15126, 15294 -recovered pasa_asmbl_6772.p1, internal, 15419, 15511 -recovered pasa_asmbl_6772.p1, internal, 15972, 16146 -recovered pasa_asmbl_6772.p1, internal, 16663, 16802 -recovered pasa_asmbl_6772.p1, internal, 17102, 17203 -recovered pasa_asmbl_6772.p1, internal, 17307, 17455 -recovered pasa_asmbl_6772.p1, internal, 17562, 17690 -recovered pasa_asmbl_6772.p1, internal, 17794, 17996 -recovered pasa_asmbl_6772.p1, internal, 18468, 18633 -recovered pasa_asmbl_6772.p1, internal, 18775, 18891 -recovered pasa_asmbl_6772.p1, internal, 19374, 19488 -recovered pasa_asmbl_6772.p1, internal, 19618, 19698 Valid prediction for GlimmerHMM_glimmerT_27969-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 39740, rend_intergenic: 38214 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53046, rend_intergenic: 51885 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58991, rend_intergenic: 53223 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74532, rend_intergenic: 59853 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93422, rend_intergenic: 76979 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110355, rend_intergenic: 93429 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119476, rend_intergenic: 111067 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130460, rend_intergenic: 122454 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149987, rend_intergenic: 137141 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154146, rend_intergenic: 150246 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165957, rend_intergenic: 155074 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169893, rend_intergenic: 166062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191225, rend_intergenic: 189575 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217997, rend_intergenic: 200174 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 220111 -exon list size: 853 building trellis 0.1 0.2 0.4 0.5 0.6 0.7 0.8 0.9 1.1 1.2 1.3 1.4 1.5 1.6 1.8 1.9 2.0 2.1 2.2 2.3 2.5 2.6 2.7 2.8 2.9 3.0 3.2 3.3 3.4 3.5 3.6 3.7 3.9 4.0 4.1 4.2 4.3 4.4 4.6 4.7 4.8 4.9 5.0 5.1 5.3 5.4 5.5 5.6 5.7 5.8 6.0 6.1 6.2 6.3 6.4 6.5 6.7 6.8 6.9 7.0 7.1 7.3 7.4 7.5 7.6 7.7 7.8 8.0 8.1 8.2 8.3 8.4 8.5 8.7 8.8 8.9 9.0 9.1 9.2 9.4 9.5 9.6 9.7 9.8 9.9 10.1 10.2 10.3 10.4 10.5 10.6 10.8 10.9 11.0 11.1 11.2 11.3 11.5 11.6 11.7 11.8 11.9 12.0 12.2 12.3 12.4 12.5 12.6 12.7 12.9 13.0 13.1 13.2 13.3 13.5 13.6 13.7 13.8 13.9 14.0 14.2 14.3 14.4 14.5 14.6 14.7 14.9 15.0 15.1 15.2 15.3 15.4 15.6 15.7 15.8 15.9 16.0 16.1 16.3 16.4 16.5 16.6 16.7 16.8 17.0 17.1 17.2 17.3 17.4 17.5 17.7 17.8 17.9 18.0 18.1 18.2 18.4 18.5 18.6 18.7 18.8 18.9 19.1 19.2 19.3 19.4 19.5 19.6 19.8 19.9 20.0 20.1 20.2 20.4 20.5 20.6 20.7 20.8 20.9 21.1 21.2 21.3 21.4 21.5 21.6 21.8 21.9 22.0 22.1 22.2 22.3 22.5 22.6 22.7 22.8 22.9 23.0 23.2 23.3 23.4 23.5 23.6 23.7 23.9 24.0 24.1 24.2 24.3 24.4 24.6 24.7 24.8 24.9 25.0 25.1 25.3 25.4 25.5 25.6 25.7 25.8 26.0 26.1 26.2 26.3 26.4 26.5 26.7 26.8 26.9 27.0 27.1 27.3 27.4 27.5 27.6 27.7 27.8 28.0 28.1 28.2 28.3 28.4 28.5 28.7 28.8 28.9 29.0 29.1 29.2 29.4 29.5 29.6 29.7 29.8 29.9 30.1 30.2 30.3 30.4 30.5 30.6 30.8 30.9 31.0 31.1 31.2 31.3 31.5 31.6 31.7 31.8 31.9 32.0 32.2 32.3 32.4 32.5 32.6 32.7 32.9 33.0 33.1 33.2 33.3 33.5 33.6 33.7 33.8 33.9 34.0 34.2 34.3 34.4 34.5 34.6 34.7 34.9 35.0 35.1 35.2 35.3 35.4 35.6 35.7 35.8 35.9 36.0 36.1 36.3 36.4 36.5 36.6 36.7 36.8 37.0 37.1 37.2 37.3 37.4 37.5 37.7 37.8 37.9 38.0 38.1 38.2 38.4 38.5 38.6 38.7 38.8 38.9 39.1 39.2 39.3 39.4 39.5 39.6 39.8 39.9 40.0 40.1 40.2 40.4 40.5 40.6 40.7 40.8 40.9 41.1 41.2 41.3 41.4 41.5 41.6 41.8 41.9 42.0 42.1 42.2 42.3 42.5 42.6 42.7 42.8 42.9 43.0 43.2 43.3 43.4 43.5 43.6 43.7 43.9 44.0 44.1 44.2 44.3 44.4 44.6 44.7 44.8 44.9 45.0 45.1 45.3 45.4 45.5 45.6 45.7 45.8 46.0 46.1 46.2 46.3 46.4 46.5 46.7 46.8 46.9 47.0 47.1 47.3 47.4 47.5 47.6 47.7 47.8 48.0 48.1 48.2 48.3 48.4 48.5 48.7 48.8 48.9 49.0 49.1 49.2 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.8 50.9 51.0 51.1 51.2 51.3 51.5 51.6 51.7 51.8 51.9 52.0 52.2 52.3 52.4 52.5 52.6 52.7 52.9 53.0 53.1 53.2 53.3 53.5 53.6 53.7 53.8 53.9 54.0 54.2 54.3 54.4 54.5 54.6 54.7 54.9 55.0 55.1 55.2 55.3 55.4 55.6 55.7 55.8 55.9 56.0 56.1 56.3 56.4 56.5 56.6 56.7 56.8 57.0 57.1 57.2 57.3 57.4 57.5 57.7 57.8 57.9 58.0 58.1 58.2 58.4 58.5 58.6 58.7 58.8 58.9 59.1 59.2 59.3 59.4 59.5 59.6 59.8 59.9 60.0 60.1 60.2 60.4 60.5 60.6 60.7 60.8 60.9 61.1 61.2 61.3 61.4 61.5 61.6 61.8 61.9 62.0 62.1 62.2 62.3 62.5 62.6 62.7 62.8 62.9 63.0 63.2 63.3 63.4 63.5 63.6 63.7 63.9 64.0 64.1 64.2 64.3 64.4 64.6 64.7 64.8 64.9 65.0 65.1 65.3 65.4 65.5 65.6 65.7 65.8 66.0 66.1 66.2 66.3 66.4 66.5 66.7 66.8 66.9 67.0 67.1 67.3 67.4 67.5 67.6 67.7 67.8 68.0 68.1 68.2 68.3 68.4 68.5 68.7 68.8 68.9 69.0 69.1 69.2 69.4 69.5 69.6 69.7 69.8 69.9 70.1 70.2 70.3 70.4 70.5 70.6 70.8 70.9 71.0 71.1 71.2 71.3 71.5 71.6 71.7 71.8 71.9 72.0 72.2 72.3 72.4 72.5 72.6 72.7 72.9 73.0 73.1 73.2 73.3 73.5 73.6 73.7 73.8 73.9 74.0 74.2 74.3 74.4 74.5 74.6 74.7 74.9 75.0 75.1 75.2 75.3 75.4 75.6 75.7 75.8 75.9 76.0 76.1 76.3 76.4 76.5 76.6 76.7 76.8 77.0 77.1 77.2 77.3 77.4 77.5 77.7 77.8 77.9 78.0 78.1 78.2 78.4 78.5 78.6 78.7 78.8 78.9 79.1 79.2 79.3 79.4 79.5 79.6 79.8 79.9 80.0 80.1 80.2 80.4 80.5 80.6 80.7 80.8 80.9 81.1 81.2 81.3 81.4 81.5 81.6 81.8 81.9 82.0 82.1 82.2 82.3 82.5 82.6 82.7 82.8 82.9 83.0 83.2 83.3 83.4 83.5 83.6 83.7 83.9 84.0 84.1 84.2 84.3 84.4 84.6 84.7 84.8 84.9 85.0 85.1 85.3 85.4 85.5 85.6 85.7 85.8 86.0 86.1 86.2 86.3 86.4 86.5 86.7 86.8 86.9 87.0 87.1 87.3 87.4 87.5 87.6 87.7 87.8 88.0 88.1 88.2 88.3 88.4 88.5 88.7 88.8 88.9 89.0 89.1 89.2 89.4 89.5 89.6 89.7 89.8 89.9 90.1 90.2 90.3 90.4 90.5 90.6 90.8 90.9 91.0 91.1 91.2 91.3 91.5 91.6 91.7 91.8 91.9 92.0 92.2 92.3 92.4 92.5 92.6 92.7 92.9 93.0 93.1 93.2 93.3 93.5 93.6 93.7 93.8 93.9 94.0 94.2 94.3 94.4 94.5 94.6 94.7 94.9 95.0 95.1 95.2 95.3 95.4 95.6 95.7 95.8 95.9 96.0 96.1 96.3 96.4 96.5 96.6 96.7 96.8 97.0 97.1 97.2 97.3 97.4 97.5 97.7 97.8 97.9 98.0 98.1 98.2 98.4 98.5 98.6 98.7 98.8 98.9 99.1 99.2 99.3 99.4 99.5 99.6 99.8 99.9 -found 35 predictions from path traversal Error with prediction: snap lend_intergenic: 39740, rend_intergenic: 38214 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53046, rend_intergenic: 51885 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58991, rend_intergenic: 53223 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74532, rend_intergenic: 59853 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93422, rend_intergenic: 76979 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110355, rend_intergenic: 93429 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119476, rend_intergenic: 111067 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130460, rend_intergenic: 122454 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149987, rend_intergenic: 137141 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154146, rend_intergenic: 150246 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165957, rend_intergenic: 155074 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169893, rend_intergenic: 166062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191225, rend_intergenic: 189575 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217997, rend_intergenic: 200174 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 20 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 36464 -exon list size: 14 building trellis 6.2 12.5 18.8 25.0 31.2 37.5 43.8 50.0 56.2 62.5 68.8 75.0 81.2 87.5 93.8 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 36368 -exon list size: 12 building trellis 7.1 14.3 21.4 28.6 35.7 42.9 50.0 57.1 64.3 71.4 78.6 85.7 92.9 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 34071 -exon list size: 11 building trellis 7.7 15.4 23.1 30.8 38.5 46.2 53.8 61.5 69.2 76.9 84.6 92.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 33222 -exon list size: 7 building trellis 11.1 22.2 33.3 44.4 55.6 66.7 77.8 88.9 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 18203 -exon list size: 1 building trellis 33.3 66.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -no exons in range 1868 - 18203 -building DP trellis -building trellis in range 18231 - 33222 -exon list size: 5 building trellis 14.3 28.6 42.9 57.1 71.4 85.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 18231 - 32877 -exon list size: 4 building trellis 16.7 33.3 50.0 66.7 83.3 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 18231 - 32170 -exon list size: 1 building trellis 33.3 66.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -no exons in range 18231 - 31355