-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_5712334-5927315 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.47999_t Valid prediction for GeneMark_model.47994_t Valid prediction for Augustus_model.g18508.t1 Valid prediction for GlimmerHMM_glimmerT_27739-T1 Valid prediction for GeneMark_model.47984_t Couldn't classify 102154, 104448 Sorry, prediction pasa_asmbl_5553.p1 fails validation. (GCC) CA 102154-104448 GG AGG Valid prediction for snap_scaffold_11-snap.1429-T1 Valid prediction for snap_scaffold_11-snap.1399-T1 Couldn't classify 47049, 47540 Sorry, prediction pasa_asmbl_5551.p1 fails validation. (GCC) GA 47049-47540 AG AAA Valid prediction for GeneMark_model.47987_t Valid prediction for GeneMark_model.47982_t Valid prediction for pasa_asmbl_5552.p1 Valid prediction for GlimmerHMM_glimmerT_27738-T1 Valid prediction for snap_scaffold_11-snap.1395-T1 Valid prediction for GeneMark_model.47977_t Valid prediction for Augustus_model.g18500.t1 Valid prediction for Augustus_model.g18494.t1 Valid prediction for snap_scaffold_11-snap.1415-T1 Valid prediction for GeneMark_model.47974_t Valid prediction for GlimmerHMM_glimmerT_27735-T1 Valid prediction for GlimmerHMM_glimmerT_27740-T1 Valid prediction for snap_scaffold_11-snap.1433-T1 Couldn't classify 2647, 2665 Couldn't classify 5949, 6112 Sorry, prediction pasa_asmbl_5546.p1 fails validation. (AAG) AC 2647-2665 GT GGG (CCT) AG 2783-2856 GT TGG (GAT) AG 2989-3123 GT AGG (GGT) AG 3754-4021 GT AGG (ATG) AG 5949-6112 AG TGA -recovered pasa_asmbl_5546.p1, internal, 2783, 2856 -recovered pasa_asmbl_5546.p1, internal, 2989, 3123 -recovered pasa_asmbl_5546.p1, internal, 3754, 4021 Valid prediction for Augustus_model.g18488.t1 Valid prediction for GeneMark_model.47975_t Valid prediction for HiQ_model.g18505.t1 Valid prediction for GlimmerHMM_glimmerT_27742-T1 Valid prediction for CodingQuarry_transcript_8052-T1 Valid prediction for snap_scaffold_11-snap.1414-T1 Valid prediction for snap_scaffold_11-snap.1391-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_27734-T1 Valid prediction for GlimmerHMM_glimmerT_27743-T1 Valid prediction for snap_scaffold_11-snap.1384-T1 Valid prediction for GeneMark_model.48001_t Couldn't classify 40469, 40747 Couldn't classify 42911, 43039 Sorry, prediction pasa_asmbl_6230.p1 fails validation. (CGC) TA 40469-40747 GT TGG (AAC) AG 42911-43039 GG CAG Valid prediction for snap_scaffold_11-snap.1424-T1 Sorry, intron length (3) is less than minimum required (10) Couldn't classify 207508, 207669 Sorry, prediction pasa_asmbl_5556.p1 fails validation. (TGC) CG 207508-207669 GT AGG (TTC) AG 207862-208011 GT TGG (GTG) AG 208227-208369 GT CCG (AGA) AG 208689-209121 GT CGG (GTG) AG 209517-209867 GT AGG (CTG) AG 210109-210285 GT AGG (CAG) AG 210584-210640 GT AGG (GTG) AG 211022-211171 AG GAA -recovered pasa_asmbl_5556.p1, terminal, 211022, 211171 -recovered pasa_asmbl_5556.p1, internal, 207862, 208011 -recovered pasa_asmbl_5556.p1, internal, 208227, 208369 -recovered pasa_asmbl_5556.p1, internal, 208689, 209121 -recovered pasa_asmbl_5556.p1, internal, 209517, 209867 -recovered pasa_asmbl_5556.p1, internal, 210109, 210285 -recovered pasa_asmbl_5556.p1, internal, 210584, 210640 Couldn't classify 201050, 201130 Couldn't classify 203745, 203764 Sorry, prediction pasa_asmbl_5555.p1 fails validation. (AGT) CT 201050-201130 GT AGG (GTG) AG 201448-201616 GT CAG (GGC) AG 201726-201893 GT GGG (ATC) AG 202357-202617 GT AGG (TGG) AG 203745-203764 CC AGC -recovered pasa_asmbl_5555.p1, internal, 201448, 201616 -recovered pasa_asmbl_5555.p1, internal, 201726, 201893 -recovered pasa_asmbl_5555.p1, internal, 202357, 202617 Valid prediction for Augustus_model.g18489.t1 Valid prediction for snap_scaffold_11-snap.1394-T1 Couldn't classify 45846, 46838 Sorry, prediction pasa_asmbl_5550.p1 fails validation. (CAC) AG 45846-46838 AT AGA Valid prediction for CodingQuarry_transcript_8050-T1 Valid prediction for Augustus_model.g18492.t1 Valid prediction for snap_scaffold_11-snap.1408-T1 Valid prediction for snap_scaffold_11-snap.1419-T1 Valid prediction for GeneMark_model.48009_t Valid prediction for GeneMark_model.47992_t Valid prediction for snap_scaffold_11-snap.1420-T1 Valid prediction for Augustus_model.g18491.t1 Valid prediction for GeneMark_model.47990_t Valid prediction for GlimmerHMM_glimmerT_27736-T1 Valid prediction for pasa_asmbl_5554.p1 Valid prediction for snap_scaffold_11-snap.1404-T1 Valid prediction for snap_scaffold_11-snap.1432-T1 Valid prediction for snap_scaffold_11-snap.1407-T1 Valid prediction for GeneMark_model.47980_t Valid prediction for GeneMark_model.47985_t Valid prediction for GlimmerHMM_glimmerT_27747-T1 Valid prediction for snap_scaffold_11-snap.1434-T1 Valid prediction for GeneMark_model.47996_t Valid prediction for HiQ_model.g18498.t1 Valid prediction for CodingQuarry_transcript_8047-T1 Valid prediction for snap_scaffold_11-snap.1417-T1 Valid prediction for GlimmerHMM_glimmerT_27753-T1 Valid prediction for pasa_asmbl_6247.p1 Valid prediction for GlimmerHMM_glimmerT_27756-T1 Valid prediction for snap_scaffold_11-snap.1397-T1 Valid prediction for snap_scaffold_11-snap.1388-T1 Valid prediction for snap_scaffold_11-snap.1385-T1 Valid prediction for GlimmerHMM_glimmerT_27741-T1 Valid prediction for snap_scaffold_11-snap.1427-T1 Valid prediction for HiQ_model.g18493.t1 Valid prediction for snap_scaffold_11-snap.1401-T1 Valid prediction for GeneMark_model.47979_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.47991_t Valid prediction for snap_scaffold_11-snap.1418-T1 Valid prediction for snap_scaffold_11-snap.1422-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.47983_t Valid prediction for Augustus_model.g18501.t1 Valid prediction for GlimmerHMM_glimmerT_27754-T1 Valid prediction for snap_scaffold_11-snap.1400-T1 Valid prediction for GeneMark_model.47971_t Valid prediction for snap_scaffold_11-snap.1410-T1 Valid prediction for pasa_asmbl_6663.p1 Valid prediction for snap_scaffold_11-snap.1386-T1 Valid prediction for snap_scaffold_11-snap.1425-T1 Valid prediction for GeneMark_model.47998_t Valid prediction for pasa_asmbl_6655.p1 Valid prediction for GeneMark_model.47986_t Valid prediction for GeneMark_model.48000_t Valid prediction for HiQ_model.g18504.t1 Valid prediction for snap_scaffold_11-snap.1405-T1 Valid prediction for GlimmerHMM_glimmerT_27744-T1 Valid prediction for GlimmerHMM_glimmerT_27748-T1 Valid prediction for Augustus_model.g18490.t1 Valid prediction for Augustus_model.g18506.t1 Valid prediction for GeneMark_model.47981_t Valid prediction for Augustus_model.g18497.t1 Couldn't classify 50589, 51455 Sorry, prediction pasa_asmbl_6666.p1 fails validation. (ACT) CC 50589-51455 TT TCT Valid prediction for snap_scaffold_11-snap.1390-T1 Valid prediction for GlimmerHMM_glimmerT_27733-T1 Valid prediction for GeneMark_model.47997_t Valid prediction for snap_scaffold_11-snap.1421-T1 Valid prediction for GeneMark_model.48008_t Valid prediction for CodingQuarry_transcript_8051-T1 Valid prediction for HiQ_model.g18496.t1 Valid prediction for snap_scaffold_11-snap.1411-T1 Valid prediction for snap_scaffold_11-snap.1428-T1 Valid prediction for Augustus_model.g18486.t1 Valid prediction for GeneMark_model.47978_t Valid prediction for snap_scaffold_11-snap.1413-T1 Couldn't classify 57046, 57519 Sorry, prediction pasa_asmbl_6661.p1 fails validation. (GTT) TT 57046-57519 GT AGG (AAG) AG 57757-57879 GT AGG (GCA) AG 58165-58276 GT TGG (CTA) AG 58355-58557 GT GCG (GAT) AG 58699-58802 GT ACG (GTG) AG 59052-59094 GT TTG (AGC) AG 59245-59349 GT AGG (GCC) AG 59429-59540 GT AGG (GTA) AG 59772-59969 GT AGG (GTG) AG 60057-60215 GT AGG (GTG) AG 60342-60419 GT TGG (GTA) AG 60753-61675 CA AGC -recovered pasa_asmbl_6661.p1, terminal, 60753, 61675 -recovered pasa_asmbl_6661.p1, internal, 57757, 57879 -recovered pasa_asmbl_6661.p1, internal, 58165, 58276 -recovered pasa_asmbl_6661.p1, internal, 58355, 58557 -recovered pasa_asmbl_6661.p1, internal, 58699, 58802 -recovered pasa_asmbl_6661.p1, internal, 59052, 59094 -recovered pasa_asmbl_6661.p1, internal, 59245, 59349 -recovered pasa_asmbl_6661.p1, internal, 59429, 59540 -recovered pasa_asmbl_6661.p1, internal, 59772, 59969 -recovered pasa_asmbl_6661.p1, internal, 60057, 60215 -recovered pasa_asmbl_6661.p1, internal, 60342, 60419 Valid prediction for GlimmerHMM_glimmerT_27737-T1 Valid prediction for snap_scaffold_11-snap.1398-T1 Valid prediction for Augustus_model.g18503.t1 Valid prediction for snap_scaffold_11-snap.1402-T1 Valid prediction for snap_scaffold_11-snap.1431-T1 Valid prediction for GlimmerHMM_glimmerT_27757-T1 Valid prediction for GlimmerHMM_glimmerT_27752-T1 Valid prediction for snap_scaffold_11-snap.1423-T1 Valid prediction for snap_scaffold_11-snap.1393-T1 Valid prediction for GlimmerHMM_glimmerT_27730-T1 Valid prediction for Augustus_model.g18487.t1 Valid prediction for Augustus_model.g18495.t1 Valid prediction for GlimmerHMM_glimmerT_27732-T1 Valid prediction for snap_scaffold_11-snap.1403-T1 Valid prediction for GlimmerHMM_glimmerT_27749-T1 Valid prediction for Augustus_model.g18502.t1 Valid prediction for GeneMark_model.47993_t Valid prediction for snap_scaffold_11-snap.1392-T1 Valid prediction for snap_scaffold_11-snap.1412-T1 Valid prediction for GlimmerHMM_glimmerT_27755-T1 Valid prediction for snap_scaffold_11-snap.1389-T1 Valid prediction for snap_scaffold_11-snap.1416-T1 Valid prediction for snap_scaffold_11-snap.1396-T1 Sorry, intron length (5) is less than minimum required (10) Valid prediction for GeneMark_model.48005_t Valid prediction for GeneMark_model.47995_t Valid prediction for GlimmerHMM_glimmerT_27745-T1 Valid prediction for GeneMark_model.47989_t Valid prediction for GlimmerHMM_glimmerT_27751-T1 Valid prediction for GlimmerHMM_glimmerT_27750-T1 Valid prediction for snap_scaffold_11-snap.1430-T1 Valid prediction for GeneMark_model.47976_t Couldn't classify 54920, 54926 Couldn't classify 56687, 56817 Sorry, prediction pasa_asmbl_6665.p1 fails validation. (GTA) CA 54920-54926 GT AGG (TAA) AG 55042-55610 GT AGG (GTA) AG 55863-56130 GT AGG (ATG) AG 56305-56607 GT AGG (CCA) AG 56687-56817 AC ACA add_exon() Sorry, pasa_asmbl_6665.p1 56305-56607-initial-1 is invalid. -recovered pasa_asmbl_6665.p1, initial, 56305, 56607 -recovered pasa_asmbl_6665.p1, internal, 55042, 55610 -recovered pasa_asmbl_6665.p1, internal, 55863, 56130 -recovered pasa_asmbl_6665.p1, internal, 56305, 56607 Valid prediction for GlimmerHMM_glimmerT_27746-T1 Couldn't classify 92978, 93754 Sorry, prediction Augustus_model.g18499.t1 fails validation. (ATG) TT 75039-75106 GT AGG (CTC) AG 75592-75708 GT AGG (GTG) AG 77163-77225 GT AGG (GAA) AG 77672-77729 GT AGG (AGT) AG 78679-78849 GT AGG (AAA) AG 79010-79147 GT AGG (GTG) AG 79395-79577 GT GGG (ACC) AG 81944-82104 GT AGG (CCA) AG 83091-83280 GT AGG (GTG) AG 83371-83508 GT ATG (GAC) AG 83662-83849 GT AGG (GAT) AG 84462-84553 GT TGG (ATA) AG 86722-86847 GT TGG (CTA) AG 87097-87167 GT AGG (ACA) AG 88192-88313 GT AGG (GAT) AG 89128-89257 GT AGG (GTC) AG 89357-89468 GT CGG (AGA) AG 89552-89615 GT AGG (CTG) AG 89703-89825 GT AGG (CAC) AG 89959-90113 GT TGG (ATA) AG 90340-90395 GT AGG (GAG) AG 90651-90923 GT GGG (GGT) AG 91067-91194 GT AGG (TGA) AG 91440-91582 GT AGG (ACT) AG 91685-91858 GT AGG (GGA) AG 92104-92203 GT AGG (ATC) AG 92368-92765 GT AGG (ATC) AG 92978-93754 GT TGG -recovered Augustus_model.g18499.t1, initial, 75039, 75106 -recovered Augustus_model.g18499.t1, terminal, 91685, 91858 -recovered Augustus_model.g18499.t1, internal, 75592, 75708 -recovered Augustus_model.g18499.t1, internal, 77163, 77225 -recovered Augustus_model.g18499.t1, internal, 77672, 77729 -recovered Augustus_model.g18499.t1, internal, 78679, 78849 -recovered Augustus_model.g18499.t1, internal, 79010, 79147 -recovered Augustus_model.g18499.t1, internal, 79395, 79577 -recovered Augustus_model.g18499.t1, internal, 81944, 82104 -recovered Augustus_model.g18499.t1, internal, 83091, 83280 -recovered Augustus_model.g18499.t1, internal, 83371, 83508 -recovered Augustus_model.g18499.t1, internal, 83662, 83849 -recovered Augustus_model.g18499.t1, internal, 84462, 84553 -recovered Augustus_model.g18499.t1, internal, 86722, 86847 -recovered Augustus_model.g18499.t1, internal, 87097, 87167 -recovered Augustus_model.g18499.t1, internal, 88192, 88313 -recovered Augustus_model.g18499.t1, internal, 89128, 89257 -recovered Augustus_model.g18499.t1, internal, 89357, 89468 -recovered Augustus_model.g18499.t1, internal, 89552, 89615 -recovered Augustus_model.g18499.t1, internal, 89703, 89825 -recovered Augustus_model.g18499.t1, internal, 89959, 90113 -recovered Augustus_model.g18499.t1, internal, 90340, 90395 -recovered Augustus_model.g18499.t1, internal, 90651, 90923 -recovered Augustus_model.g18499.t1, internal, 91067, 91194 -recovered Augustus_model.g18499.t1, internal, 91440, 91582 -recovered Augustus_model.g18499.t1, internal, 91685, 91858 -recovered Augustus_model.g18499.t1, internal, 92104, 92203 -recovered Augustus_model.g18499.t1, internal, 92368, 92765 -recovered Augustus_model.g18499.t1, internal, 92978, 93754 Valid prediction for GlimmerHMM_glimmerT_27731-T1 Valid prediction for snap_scaffold_11-snap.1406-T1 Valid prediction for GeneMark_model.48004_t Valid prediction for pasa_asmbl_6668.p1 Valid prediction for snap_scaffold_11-snap.1426-T1 Valid prediction for CodingQuarry_transcript_8048-T1 Valid prediction for GeneMark_model.48007_t Valid prediction for GeneMark_model.48002_t Valid prediction for snap_scaffold_11-snap.1435-T1 Valid prediction for GeneMark_model.47973_t Valid prediction for Augustus_model.g18507.t1 Valid prediction for GeneMark_model.47988_t Valid prediction for snap_scaffold_11-snap.1387-T1 Valid prediction for snap_scaffold_11-snap.1409-T1 Valid prediction for GeneMark_model.48006_t Valid prediction for CodingQuarry_transcript_8049-T1 Valid prediction for GeneMark_model.47972_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14232, rend_intergenic: 11080 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18308, rend_intergenic: 15806 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24819, rend_intergenic: 18859 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30880, rend_intergenic: 25910 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34271, rend_intergenic: 33042 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47540, rend_intergenic: 47186 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56313, rend_intergenic: 48356 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59259, rend_intergenic: 56826 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61211, rend_intergenic: 60267 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63709, rend_intergenic: 61655 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66867, rend_intergenic: 63711 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75596, rend_intergenic: 67328 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85203, rend_intergenic: 80419 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92014, rend_intergenic: 87427 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104448, rend_intergenic: 95039 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122671, rend_intergenic: 120269 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126779, rend_intergenic: 122718 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131930, rend_intergenic: 127696 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140571, rend_intergenic: 132609 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162299, rend_intergenic: 153681 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180481, rend_intergenic: 175310 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 214982 -exon list size: 757 building trellis 0.1 0.3 0.4 0.5 0.7 0.8 0.9 1.1 1.2 1.3 1.4 1.6 1.7 1.8 2.0 2.1 2.2 2.4 2.5 2.6 2.8 2.9 3.0 3.2 3.3 3.4 3.6 3.7 3.8 4.0 4.1 4.2 4.3 4.5 4.6 4.7 4.9 5.0 5.1 5.3 5.4 5.5 5.7 5.8 5.9 6.1 6.2 6.3 6.5 6.6 6.7 6.9 7.0 7.1 7.2 7.4 7.5 7.6 7.8 7.9 8.0 8.2 8.3 8.4 8.6 8.7 8.8 9.0 9.1 9.2 9.4 9.5 9.6 9.7 9.9 10.0 10.1 10.3 10.4 10.5 10.7 10.8 10.9 11.1 11.2 11.3 11.5 11.6 11.7 11.9 12.0 12.1 12.3 12.4 12.5 12.6 12.8 12.9 13.0 13.2 13.3 13.4 13.6 13.7 13.8 14.0 14.1 14.2 14.4 14.5 14.6 14.8 14.9 15.0 15.2 15.3 15.4 15.5 15.7 15.8 15.9 16.1 16.2 16.3 16.5 16.6 16.7 16.9 17.0 17.1 17.3 17.4 17.5 17.7 17.8 17.9 18.1 18.2 18.3 18.4 18.6 18.7 18.8 19.0 19.1 19.2 19.4 19.5 19.6 19.8 19.9 20.0 20.2 20.3 20.4 20.6 20.7 20.8 20.9 21.1 21.2 21.3 21.5 21.6 21.7 21.9 22.0 22.1 22.3 22.4 22.5 22.7 22.8 22.9 23.1 23.2 23.3 23.5 23.6 23.7 23.8 24.0 24.1 24.2 24.4 24.5 24.6 24.8 24.9 25.0 25.2 25.3 25.4 25.6 25.7 25.8 26.0 26.1 26.2 26.4 26.5 26.6 26.7 26.9 27.0 27.1 27.3 27.4 27.5 27.7 27.8 27.9 28.1 28.2 28.3 28.5 28.6 28.7 28.9 29.0 29.1 29.2 29.4 29.5 29.6 29.8 29.9 30.0 30.2 30.3 30.4 30.6 30.7 30.8 31.0 31.1 31.2 31.4 31.5 31.6 31.8 31.9 32.0 32.1 32.3 32.4 32.5 32.7 32.8 32.9 33.1 33.2 33.3 33.5 33.6 33.7 33.9 34.0 34.1 34.3 34.4 34.5 34.7 34.8 34.9 35.0 35.2 35.3 35.4 35.6 35.7 35.8 36.0 36.1 36.2 36.4 36.5 36.6 36.8 36.9 37.0 37.2 37.3 37.4 37.5 37.7 37.8 37.9 38.1 38.2 38.3 38.5 38.6 38.7 38.9 39.0 39.1 39.3 39.4 39.5 39.7 39.8 39.9 40.1 40.2 40.3 40.4 40.6 40.7 40.8 41.0 41.1 41.2 41.4 41.5 41.6 41.8 41.9 42.0 42.2 42.3 42.4 42.6 42.7 42.8 43.0 43.1 43.2 43.3 43.5 43.6 43.7 43.9 44.0 44.1 44.3 44.4 44.5 44.7 44.8 44.9 45.1 45.2 45.3 45.5 45.6 45.7 45.8 46.0 46.1 46.2 46.4 46.5 46.6 46.8 46.9 47.0 47.2 47.3 47.4 47.6 47.7 47.8 48.0 48.1 48.2 48.4 48.5 48.6 48.7 48.9 49.0 49.1 49.3 49.4 49.5 49.7 49.8 49.9 50.1 50.2 50.3 50.5 50.6 50.7 50.9 51.0 51.1 51.3 51.4 51.5 51.6 51.8 51.9 52.0 52.2 52.3 52.4 52.6 52.7 52.8 53.0 53.1 53.2 53.4 53.5 53.6 53.8 53.9 54.0 54.2 54.3 54.4 54.5 54.7 54.8 54.9 55.1 55.2 55.3 55.5 55.6 55.7 55.9 56.0 56.1 56.3 56.4 56.5 56.7 56.8 56.9 57.0 57.2 57.3 57.4 57.6 57.7 57.8 58.0 58.1 58.2 58.4 58.5 58.6 58.8 58.9 59.0 59.2 59.3 59.4 59.6 59.7 59.8 59.9 60.1 60.2 60.3 60.5 60.6 60.7 60.9 61.0 61.1 61.3 61.4 61.5 61.7 61.8 61.9 62.1 62.2 62.3 62.5 62.6 62.7 62.8 63.0 63.1 63.2 63.4 63.5 63.6 63.8 63.9 64.0 64.2 64.3 64.4 64.6 64.7 64.8 65.0 65.1 65.2 65.3 65.5 65.6 65.7 65.9 66.0 66.1 66.3 66.4 66.5 66.7 66.8 66.9 67.1 67.2 67.3 67.5 67.6 67.7 67.9 68.0 68.1 68.2 68.4 68.5 68.6 68.8 68.9 69.0 69.2 69.3 69.4 69.6 69.7 69.8 70.0 70.1 70.2 70.4 70.5 70.6 70.8 70.9 71.0 71.1 71.3 71.4 71.5 71.7 71.8 71.9 72.1 72.2 72.3 72.5 72.6 72.7 72.9 73.0 73.1 73.3 73.4 73.5 73.6 73.8 73.9 74.0 74.2 74.3 74.4 74.6 74.7 74.8 75.0 75.1 75.2 75.4 75.5 75.6 75.8 75.9 76.0 76.2 76.3 76.4 76.5 76.7 76.8 76.9 77.1 77.2 77.3 77.5 77.6 77.7 77.9 78.0 78.1 78.3 78.4 78.5 78.7 78.8 78.9 79.1 79.2 79.3 79.4 79.6 79.7 79.8 80.0 80.1 80.2 80.4 80.5 80.6 80.8 80.9 81.0 81.2 81.3 81.4 81.6 81.7 81.8 81.9 82.1 82.2 82.3 82.5 82.6 82.7 82.9 83.0 83.1 83.3 83.4 83.5 83.7 83.8 83.9 84.1 84.2 84.3 84.5 84.6 84.7 84.8 85.0 85.1 85.2 85.4 85.5 85.6 85.8 85.9 86.0 86.2 86.3 86.4 86.6 86.7 86.8 87.0 87.1 87.2 87.4 87.5 87.6 87.7 87.9 88.0 88.1 88.3 88.4 88.5 88.7 88.8 88.9 89.1 89.2 89.3 89.5 89.6 89.7 89.9 90.0 90.1 90.3 90.4 90.5 90.6 90.8 90.9 91.0 91.2 91.3 91.4 91.6 91.7 91.8 92.0 92.1 92.2 92.4 92.5 92.6 92.8 92.9 93.0 93.1 93.3 93.4 93.5 93.7 93.8 93.9 94.1 94.2 94.3 94.5 94.6 94.7 94.9 95.0 95.1 95.3 95.4 95.5 95.7 95.8 95.9 96.0 96.2 96.3 96.4 96.6 96.7 96.8 97.0 97.1 97.2 97.4 97.5 97.6 97.8 97.9 98.0 98.2 98.3 98.4 98.6 98.7 98.8 98.9 99.1 99.2 99.3 99.5 99.6 99.7 99.9 -found 39 predictions from path traversal Error with prediction: snap lend_intergenic: 14232, rend_intergenic: 11080 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18308, rend_intergenic: 15806 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24819, rend_intergenic: 18859 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30880, rend_intergenic: 25910 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34271, rend_intergenic: 33042 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47540, rend_intergenic: 47186 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56313, rend_intergenic: 48356 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59259, rend_intergenic: 56826 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61211, rend_intergenic: 60267 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63709, rend_intergenic: 61655 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66867, rend_intergenic: 63711 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75596, rend_intergenic: 67328 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85203, rend_intergenic: 80419 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92014, rend_intergenic: 87427 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104448, rend_intergenic: 95039 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122671, rend_intergenic: 120269 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126779, rend_intergenic: 122718 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131930, rend_intergenic: 127696 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140571, rend_intergenic: 132609 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162299, rend_intergenic: 153681 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 180481, rend_intergenic: 175310 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 23 predictions persist after filtering for low support