-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_5099431-5338833

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_11-snap.1265-T1
Valid prediction for GeneMark_model.47832_t
Valid prediction for GeneMark_model.47821_t
Valid prediction for GlimmerHMM_glimmerT_27633-T1
Valid prediction for GlimmerHMM_glimmerT_27650-T1
Valid prediction for Augustus_model.g18426.t1
Valid prediction for GeneMark_model.47828_t
Couldn't classify 44440, 45843
Couldn't classify 47024, 47179
Sorry, prediction pasa_asmbl_5508.p1 fails validation.
(GAC)	 AG	44440-45843	GT	AGG
(CCA)	 AG	47024-47179	AG	GTA
-recovered pasa_asmbl_5508.p1, internal, 44440, 45843
Valid prediction for GeneMark_model.47804_t
Valid prediction for GlimmerHMM_glimmerT_27634-T1
Valid prediction for GeneMark_model.47834_t
Valid prediction for GlimmerHMM_glimmerT_27639-T1
Valid prediction for GlimmerHMM_glimmerT_27645-T1
Valid prediction for snap_scaffold_11-snap.1287-T1
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 149226, 149504
Sorry, prediction pasa_asmbl_5520.p1 fails validation.
(TCT)	 AG	149226-149504	GT	AGG
(GTT)	 AG	151178-153913	GT	AGG
(GTG)	 AG	154204-155076	GT	AGG
(GCT)	 AG	156466-156567	GT	GGG
(AGG)	 AG	158590-158637	GG	GAG
-recovered pasa_asmbl_5520.p1, terminal, 158590, 158637
-recovered pasa_asmbl_5520.p1, internal, 149226, 149504
-recovered pasa_asmbl_5520.p1, internal, 151178, 153913
-recovered pasa_asmbl_5520.p1, internal, 154204, 155076
-recovered pasa_asmbl_5520.p1, internal, 156466, 156567
Couldn't classify 84666, 84917
Couldn't classify 86742, 86855
Sorry, prediction pasa_asmbl_5512.p1 fails validation.
(GAC)	 AG	84666-84917	GT	AGG
(ACC)	 AG	85342-86481	GT	GGG
(AAG)	 AG	86742-86855	AC	ACA
-recovered pasa_asmbl_5512.p1, internal, 84666, 84917
-recovered pasa_asmbl_5512.p1, internal, 85342, 86481
Valid prediction for snap_scaffold_11-snap.1294-T1
Valid prediction for CodingQuarry_transcript_8031-T1
Couldn't classify 86976, 87215
Couldn't classify 90079, 90201
Sorry, prediction pasa_asmbl_5513.p1 fails validation.
(AGC)	 CC	86976-87215	GT	AGG
(GGG)	 AG	90079-90201	GT	TGG
-recovered pasa_asmbl_5513.p1, internal, 90079, 90201
Valid prediction for snap_scaffold_11-snap.1269-T1
Valid prediction for GeneMark_model.47782_t
Valid prediction for GeneMark_model.47778_t
Valid prediction for GeneMark_model.47838_t
Valid prediction for GeneMark_model.47812_t
Valid prediction for GeneMark_model.47836_t
Valid prediction for snap_scaffold_11-snap.1261-T1
Valid prediction for snap_scaffold_11-snap.1273-T1
Valid prediction for GeneMark_model.47823_t
Valid prediction for Augustus_model.g18425.t1
Valid prediction for GlimmerHMM_glimmerT_27654-T1
Valid prediction for snap_scaffold_11-snap.1296-T1
Couldn't classify 12666, 12675
Sorry, prediction pasa_asmbl_5504.p1 fails validation.
(CTG)	 CT	12666-12675	GT	AGG
(ATT)	 AG	12781-14337	GT	GGG
(AAA)	 AG	14832-15140	GT	AGG
(GAA)	 AG	15276-15407	GT	GGG
(GCT)	 AG	15959-16122	GT	AGG
(GAC)	 AG	16680-17021	AA	GAA
-recovered pasa_asmbl_5504.p1, terminal, 16680, 17021
-recovered pasa_asmbl_5504.p1, internal, 12781, 14337
-recovered pasa_asmbl_5504.p1, internal, 14832, 15140
-recovered pasa_asmbl_5504.p1, internal, 15276, 15407
-recovered pasa_asmbl_5504.p1, internal, 15959, 16122
Valid prediction for GeneMark_model.47829_t
Valid prediction for snap_scaffold_11-snap.1241-T1
Valid prediction for Augustus_model.g18439.t1
Valid prediction for GlimmerHMM_glimmerT_27664-T1
Valid prediction for GeneMark_model.47788_t
Valid prediction for GeneMark_model.47830_t
Valid prediction for Augustus_model.g18424.t1
Valid prediction for GeneMark_model.47849_t
Valid prediction for GlimmerHMM_glimmerT_27657-T1
Valid prediction for GeneMark_model.47846_t
Valid prediction for snap_scaffold_11-snap.1285-T1
Valid prediction for Augustus_model.g18431.t1
Couldn't classify 42607, 44382
Sorry, prediction pasa_asmbl_5507.p1 fails validation.
(CTG)	 TG	42607-44382	GT	GGG
Valid prediction for GeneMark_model.47785_t
Valid prediction for snap_scaffold_11-snap.1243-T1
Valid prediction for snap_scaffold_11-snap.1259-T1
Valid prediction for snap_scaffold_11-snap.1250-T1
Valid prediction for GlimmerHMM_glimmerT_27632-T1
Valid prediction for Augustus_model.g18432.t1
Valid prediction for Augustus_model.g18444.t1
Valid prediction for Augustus_model.g18433.t1
Valid prediction for GlimmerHMM_glimmerT_27637-T1
Valid prediction for GeneMark_model.47797_t
Valid prediction for GeneMark_model.47801_t
Valid prediction for GlimmerHMM_glimmerT_27652-T1
Valid prediction for GeneMark_model.47808_t
Valid prediction for snap_scaffold_11-snap.1279-T1
Valid prediction for GeneMark_model.47825_t
Valid prediction for GlimmerHMM_glimmerT_27631-T1
Valid prediction for GlimmerHMM_glimmerT_27636-T1
Valid prediction for GeneMark_model.47816_t
Valid prediction for GlimmerHMM_glimmerT_27643-T1
Valid prediction for GlimmerHMM_glimmerT_27656-T1
Valid prediction for GeneMark_model.47789_t
Valid prediction for GlimmerHMM_glimmerT_27648-T1
Valid prediction for snap_scaffold_11-snap.1277-T1
Valid prediction for GlimmerHMM_glimmerT_27661-T1
Valid prediction for GeneMark_model.47814_t
Valid prediction for snap_scaffold_11-snap.1242-T1
Valid prediction for snap_scaffold_11-snap.1282-T1
Couldn't classify 61009, 61112
Sorry, prediction pasa_asmbl_5509.p1 fails validation.
(ATC)	 AA	61009-61112	GT	AGG
(GGT)	 AG	61400-61718	AC	AGA
-recovered pasa_asmbl_5509.p1, terminal, 61400, 61718
Valid prediction for Augustus_model.g18438.t1
Valid prediction for GeneMark_model.47787_t
Valid prediction for GeneMark_model.47844_t
Valid prediction for GeneMark_model.47842_t
Valid prediction for GeneMark_model.47783_t
Valid prediction for snap_scaffold_11-snap.1267-T1
Valid prediction for GlimmerHMM_glimmerT_27638-T1
Couldn't classify 143282, 143587
Sorry, prediction pasa_asmbl_5516.p1 fails validation.
(CTG)	 CT	143282-143587	GG	GAG
Valid prediction for Augustus_model.g18442.t1
Valid prediction for Augustus_model.g18436.t1
Valid prediction for snap_scaffold_11-snap.1257-T1
Valid prediction for GeneMark_model.47839_t
Valid prediction for GeneMark_model.47776_t
Valid prediction for Augustus_model.g18435.t1
Valid prediction for GlimmerHMM_glimmerT_27666-T1
Valid prediction for GeneMark_model.47794_t
Valid prediction for HiQ_model.g18430.t1
Valid prediction for CodingQuarry_transcript_8036-T1
Valid prediction for GlimmerHMM_glimmerT_27646-T1
Valid prediction for snap_scaffold_11-snap.1252-T1
Valid prediction for GeneMark_model.47810_t
Valid prediction for snap_scaffold_11-snap.1288-T1
Couldn't classify 3655, 3666
Sorry, prediction pasa_asmbl_5501.p1 fails validation.
(GAA)	 AG	3655-3666	GT	TGG
(GCA)	 AG	4144-4182	GT	GGG
(GAG)	 AG	4308-4417	GT	GAG
(GAG)	 AG	4514-4569	GT	AAG
(AAA)	 AG	4675-4730	GT	TGG
(GAG)	 AG	5117-5243	GT	GGG
(CGG)	 AG	5389-5529	GT	CGG
(GCA)	 AG	5619-5665	CA	AAC
add_exon() Sorry, pasa_asmbl_5501.p1 4514-4569-terminal-2 is invalid.
-recovered pasa_asmbl_5501.p1, terminal, 4514, 4569
-recovered pasa_asmbl_5501.p1, terminal, 5619, 5665
-recovered pasa_asmbl_5501.p1, internal, 3655, 3666
-recovered pasa_asmbl_5501.p1, internal, 4144, 4182
-recovered pasa_asmbl_5501.p1, internal, 4308, 4417
-recovered pasa_asmbl_5501.p1, internal, 4514, 4569
-recovered pasa_asmbl_5501.p1, internal, 4675, 4730
-recovered pasa_asmbl_5501.p1, internal, 5117, 5243
-recovered pasa_asmbl_5501.p1, internal, 5389, 5529
Valid prediction for snap_scaffold_11-snap.1291-T1
Valid prediction for Augustus_model.g18427.t1
Valid prediction for snap_scaffold_11-snap.1255-T1
Valid prediction for GeneMark_model.47818_t
Valid prediction for GeneMark_model.47795_t
Valid prediction for Augustus_model.g18434.t1
Valid prediction for Augustus_model.g18440.t1
Valid prediction for snap_scaffold_11-snap.1245-T1
Valid prediction for snap_scaffold_11-snap.1246-T1
Valid prediction for snap_scaffold_11-snap.1249-T1
Valid prediction for GeneMark_model.47806_t
Couldn't classify 27733, 27906
Sorry, prediction pasa_asmbl_6248.p1 fails validation.
(GGC)	 CC	27733-27906	GT	AGG
(ACG)	 AG	28150-28297	GT	AGG
(TGA)	 AG	28515-28549	GT	CGG
(AGT)	 AG	28660-28750	GT	CAG
(ACA)	 AG	29034-29073	GT	TGG
(CAT)	 AG	29204-29294	GT	AGG
(GTG)	 AG	29420-29513	GT	AGG
(GGG)	 AG	29613-29698	GT	CTG
(GTA)	 AG	29826-29946	GT	GGG
(GAG)	 AG	30083-30165	GT	AGG
(GCT)	 AG	30315-30377	TT	GAT
-recovered pasa_asmbl_6248.p1, terminal, 30315, 30377
-recovered pasa_asmbl_6248.p1, internal, 28150, 28297
-recovered pasa_asmbl_6248.p1, internal, 28515, 28549
-recovered pasa_asmbl_6248.p1, internal, 28660, 28750
-recovered pasa_asmbl_6248.p1, internal, 29034, 29073
-recovered pasa_asmbl_6248.p1, internal, 29204, 29294
-recovered pasa_asmbl_6248.p1, internal, 29420, 29513
-recovered pasa_asmbl_6248.p1, internal, 29613, 29698
-recovered pasa_asmbl_6248.p1, internal, 29826, 29946
-recovered pasa_asmbl_6248.p1, internal, 30083, 30165
Valid prediction for GeneMark_model.47799_t
Valid prediction for GeneMark_model.47775_t
Valid prediction for GeneMark_model.47819_t
Valid prediction for GeneMark_model.47792_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.47845_t
Valid prediction for snap_scaffold_11-snap.1254-T1
Valid prediction for GlimmerHMM_glimmerT_27644-T1
Couldn't classify 217176, 217377
Couldn't classify 217493, 217526
Sorry, prediction CodingQuarry_transcript_8033-T1 fails validation.
(ATG)	 AG	214939-215051	GT	AGG
(ACC)	 AG	215500-215574	GT	AGG
(ACG)	 AG	215679-215750	GT	AGG
(GCT)	 AG	215893-215968	GT	AGG
(CCA)	 AG	216051-216145	GT	AGG
(AAA)	 AG	216330-216405	GT	AGG
(CAA)	 AG	216515-216670	GT	TGG
(CAA)	 AG	216879-217017	GT	TGG
(TGG)	 AG	217176-217377	GG	ATG
(AGG)	 AT	217493-217526	CT	AGC
-recovered CodingQuarry_transcript_8033-T1, initial, 214939, 215051
-recovered CodingQuarry_transcript_8033-T1, internal, 214939, 215051
-recovered CodingQuarry_transcript_8033-T1, internal, 215500, 215574
-recovered CodingQuarry_transcript_8033-T1, internal, 215679, 215750
-recovered CodingQuarry_transcript_8033-T1, internal, 215893, 215968
-recovered CodingQuarry_transcript_8033-T1, internal, 216051, 216145
-recovered CodingQuarry_transcript_8033-T1, internal, 216330, 216405
-recovered CodingQuarry_transcript_8033-T1, internal, 216515, 216670
-recovered CodingQuarry_transcript_8033-T1, internal, 216879, 217017
Valid prediction for GeneMark_model.47843_t
Valid prediction for GeneMark_model.47822_t
Valid prediction for GeneMark_model.47796_t
Valid prediction for GeneMark_model.47826_t
Valid prediction for snap_scaffold_11-snap.1276-T1
Valid prediction for snap_scaffold_11-snap.1251-T1
Valid prediction for snap_scaffold_11-snap.1274-T1
Valid prediction for GlimmerHMM_glimmerT_27651-T1
Valid prediction for snap_scaffold_11-snap.1256-T1
Valid prediction for snap_scaffold_11-snap.1244-T1
Valid prediction for GlimmerHMM_glimmerT_27647-T1
Valid prediction for GlimmerHMM_glimmerT_27665-T1
Valid prediction for snap_scaffold_11-snap.1248-T1
Valid prediction for snap_scaffold_11-snap.1292-T1
Valid prediction for GeneMark_model.47835_t
Valid prediction for GeneMark_model.47781_t
Valid prediction for GeneMark_model.47837_t
Valid prediction for GlimmerHMM_glimmerT_27649-T1
Valid prediction for snap_scaffold_11-snap.1286-T1
Valid prediction for GlimmerHMM_glimmerT_27659-T1
Valid prediction for snap_scaffold_11-snap.1272-T1
Valid prediction for snap_scaffold_11-snap.1263-T1
Valid prediction for GlimmerHMM_glimmerT_27642-T1
Valid prediction for GeneMark_model.47777_t
Valid prediction for GeneMark_model.47833_t
Valid prediction for snap_scaffold_11-snap.1271-T1
Valid prediction for GeneMark_model.47815_t
Valid prediction for GlimmerHMM_glimmerT_27655-T1
Valid prediction for GlimmerHMM_glimmerT_27641-T1
Valid prediction for GeneMark_model.47847_t
Valid prediction for CodingQuarry_transcript_8034-T1
Valid prediction for snap_scaffold_11-snap.1290-T1
Valid prediction for GeneMark_model.47841_t
Valid prediction for snap_scaffold_11-snap.1258-T1
Valid prediction for GeneMark_model.47786_t
Valid prediction for pasa_asmbl_6631.p1
Valid prediction for GeneMark_model.47848_t
Valid prediction for GeneMark_model.47831_t
Valid prediction for GeneMark_model.47798_t
Valid prediction for GeneMark_model.47840_t
Valid prediction for GeneMark_model.47805_t
Valid prediction for GlimmerHMM_glimmerT_27662-T1
Valid prediction for snap_scaffold_11-snap.1295-T1
Valid prediction for GeneMark_model.47779_t
Valid prediction for snap_scaffold_11-snap.1266-T1
Valid prediction for GlimmerHMM_glimmerT_27635-T1
Valid prediction for GeneMark_model.47800_t
Valid prediction for GlimmerHMM_glimmerT_27640-T1
Valid prediction for pasa_asmbl_6629.p1
Valid prediction for GeneMark_model.47817_t
Valid prediction for GeneMark_model.47802_t
Valid prediction for GeneMark_model.47820_t
Valid prediction for HiQ_model.g18429.t1
Valid prediction for snap_scaffold_11-snap.1253-T1
Valid prediction for snap_scaffold_11-snap.1260-T1
Valid prediction for snap_scaffold_11-snap.1270-T1
Valid prediction for GeneMark_model.47790_t
Valid prediction for HiQ_model.g18428.t1
Valid prediction for snap_scaffold_11-snap.1278-T1
Valid prediction for snap_scaffold_11-snap.1281-T1
Valid prediction for snap_scaffold_11-snap.1264-T1
Valid prediction for GeneMark_model.47827_t
Valid prediction for snap_scaffold_11-snap.1247-T1
Valid prediction for Augustus_model.g18437.t1
Valid prediction for GlimmerHMM_glimmerT_27660-T1
Valid prediction for snap_scaffold_11-snap.1283-T1
Valid prediction for GlimmerHMM_glimmerT_27667-T1
Valid prediction for GeneMark_model.47811_t
Valid prediction for GeneMark_model.47791_t
Valid prediction for snap_scaffold_11-snap.1275-T1
Valid prediction for Augustus_model.g18443.t1
Valid prediction for snap_scaffold_11-snap.1289-T1
Valid prediction for snap_scaffold_11-snap.1293-T1
Valid prediction for GlimmerHMM_glimmerT_27663-T1
Valid prediction for CodingQuarry_transcript_8032-T1
Valid prediction for snap_scaffold_11-snap.1268-T1
Valid prediction for snap_scaffold_11-snap.1284-T1
Valid prediction for GeneMark_model.47809_t
Valid prediction for GeneMark_model.47824_t
Valid prediction for GlimmerHMM_glimmerT_27658-T1
Valid prediction for GlimmerHMM_glimmerT_27653-T1
Valid prediction for snap_scaffold_11-snap.1280-T1
Valid prediction for CodingQuarry_transcript_8035-T1
Valid prediction for GeneMark_model.47784_t
Valid prediction for GeneMark_model.47813_t
Valid prediction for GeneMark_model.47793_t
Valid prediction for Augustus_model.g18441.t1
Valid prediction for GeneMark_model.47807_t
Valid prediction for snap_scaffold_11-snap.1262-T1
Valid prediction for GeneMark_model.47803_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14345, rend_intergenic: 12763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16934, rend_intergenic: 14807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38668, rend_intergenic: 32469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50521, rend_intergenic: 47266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56791, rend_intergenic: 50525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60120, rend_intergenic: 57503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67270, rend_intergenic: 65078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75510, rend_intergenic: 69358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96167, rend_intergenic: 82212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97363, rend_intergenic: 96343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99888, rend_intergenic: 97519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105282, rend_intergenic: 100059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119938, rend_intergenic: 110069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138747, rend_intergenic: 121203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149561, rend_intergenic: 139826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160874, rend_intergenic: 150107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174353, rend_intergenic: 171423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183566, rend_intergenic: 176191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185849, rend_intergenic: 184164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186813, rend_intergenic: 186628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193671, rend_intergenic: 190459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196186, rend_intergenic: 194871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202313, rend_intergenic: 197046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208124, rend_intergenic: 204229  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217240, rend_intergenic: 213459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 234853, rend_intergenic: 232282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 239403
-exon list size: 1019


building trellis

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18.9    
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23.9    
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25.9    
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26.9    
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27.9    
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28.9    
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29.8    
29.9    
30.0    
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30.3    
30.4    
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30.6    
30.7    
30.8    
30.9    
31.0    
31.0    
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31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 52 predictions from path traversal
Error with prediction: snap lend_intergenic: 14345, rend_intergenic: 12763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16934, rend_intergenic: 14807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38668, rend_intergenic: 32469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50521, rend_intergenic: 47266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56791, rend_intergenic: 50525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60120, rend_intergenic: 57503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67270, rend_intergenic: 65078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75510, rend_intergenic: 69358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96167, rend_intergenic: 82212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97363, rend_intergenic: 96343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99888, rend_intergenic: 97519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105282, rend_intergenic: 100059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119938, rend_intergenic: 110069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138747, rend_intergenic: 121203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149561, rend_intergenic: 139826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160874, rend_intergenic: 150107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174353, rend_intergenic: 171423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183566, rend_intergenic: 176191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185849, rend_intergenic: 184164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186813, rend_intergenic: 186628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193671, rend_intergenic: 190459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196186, rend_intergenic: 194871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202313, rend_intergenic: 197046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208124, rend_intergenic: 204229  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217240, rend_intergenic: 213459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 234853, rend_intergenic: 232282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support