-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_4512461-4734084 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_27564-T1 Valid prediction for GlimmerHMM_glimmerT_27566-T1 Valid prediction for Augustus_model.g18378.t1 Valid prediction for snap_scaffold_11-snap.1106-T1 Valid prediction for GlimmerHMM_glimmerT_27565-T1 Valid prediction for GeneMark_model.47602_t Valid prediction for CodingQuarry_transcript_8011-T1 Valid prediction for GeneMark_model.47606_t Valid prediction for GeneMark_model.47623_t Valid prediction for snap_scaffold_11-snap.1109-T1 Valid prediction for snap_scaffold_11-snap.1140-T1 Valid prediction for pasa_asmbl_5460.p1 Valid prediction for snap_scaffold_11-snap.1153-T1 Valid prediction for GlimmerHMM_glimmerT_27556-T1 Valid prediction for GeneMark_model.47627_t Valid prediction for GeneMark_model.47640_t Valid prediction for GeneMark_model.47589_t Valid prediction for snap_scaffold_11-snap.1111-T1 Valid prediction for snap_scaffold_11-snap.1143-T1 Valid prediction for Augustus_model.g18372.t1 Valid prediction for snap_scaffold_11-snap.1157-T1 Valid prediction for snap_scaffold_11-snap.1148-T1 Valid prediction for snap_scaffold_11-snap.1142-T1 Valid prediction for CodingQuarry_transcript_8019-T1 Couldn't classify 135260, 135308 Sorry, prediction pasa_asmbl_5456.p1 fails validation. (GTG) AG 135260-135308 GT AGG (GTA) AG 135693-135737 GT TGG (TTC) AG 135990-136146 GT AGG (GGG) AG 136245-136378 GT CAG (GTG) AG 136577-136645 GT AGG (AAA) AG 136903-136956 GT AGG (ACT) AG 137173-137320 GT AGG (TGA) AG 137632-137735 GT AGG (GCA) AG 137905-138131 GT AGG (GCG) AG 138312-138570 GT AGG (GTG) AG 138691-138948 GT AGG (GAA) AG 139052-139224 AC AGA add_exon() Sorry, pasa_asmbl_5456.p1 135260-135308-terminal-3 is invalid. -recovered pasa_asmbl_5456.p1, terminal, 135260, 135308 add_exon() Sorry, pasa_asmbl_5456.p1 138312-138570-terminal-3 is invalid. -recovered pasa_asmbl_5456.p1, terminal, 138312, 138570 -recovered pasa_asmbl_5456.p1, terminal, 139052, 139224 -recovered pasa_asmbl_5456.p1, internal, 135260, 135308 -recovered pasa_asmbl_5456.p1, internal, 135693, 135737 -recovered pasa_asmbl_5456.p1, internal, 135990, 136146 -recovered pasa_asmbl_5456.p1, internal, 136245, 136378 -recovered pasa_asmbl_5456.p1, internal, 136577, 136645 -recovered pasa_asmbl_5456.p1, internal, 136903, 136956 -recovered pasa_asmbl_5456.p1, internal, 137173, 137320 -recovered pasa_asmbl_5456.p1, internal, 137632, 137735 -recovered pasa_asmbl_5456.p1, internal, 137905, 138131 -recovered pasa_asmbl_5456.p1, internal, 138312, 138570 -recovered pasa_asmbl_5456.p1, internal, 138691, 138948 Valid prediction for HiQ_model.g18379.t1 Valid prediction for HiQ_model.g18376.t1 Valid prediction for Augustus_model.g18385.t1 Valid prediction for GlimmerHMM_glimmerT_27554-T1 Couldn't classify 121754, 121825 Sorry, prediction pasa_asmbl_5450.p1 fails validation. (GCG) CA 121754-121825 GT AGG (GCT) AG 123028-123107 GT AAG (GGC) AG 123219-123281 GT GGG (ACT) AG 123786-123861 GT ATG (AAC) AG 123960-124013 GT CTG (GAG) AG 126068-126120 GT AGG (CTC) AG 126535-126568 GT AAG (GCT) AG 126975-127040 GT AGG (TCG) AG 127127-127195 GT AGG (CTC) AG 127664-127687 AG AAA -recovered pasa_asmbl_5450.p1, terminal, 127664, 127687 -recovered pasa_asmbl_5450.p1, internal, 123028, 123107 -recovered pasa_asmbl_5450.p1, internal, 123219, 123281 -recovered pasa_asmbl_5450.p1, internal, 123786, 123861 -recovered pasa_asmbl_5450.p1, internal, 123960, 124013 -recovered pasa_asmbl_5450.p1, internal, 126068, 126120 -recovered pasa_asmbl_5450.p1, internal, 126535, 126568 -recovered pasa_asmbl_5450.p1, internal, 126975, 127040 -recovered pasa_asmbl_5450.p1, internal, 127127, 127195 Couldn't classify 197323, 197353 Couldn't classify 197476, 197801 Sorry, prediction pasa_asmbl_5461.p1 fails validation. (GGA) AA 197323-197353 GT GGG (TGT) AG 197476-197801 GT ACG -recovered pasa_asmbl_5461.p1, internal, 197476, 197801 Valid prediction for snap_scaffold_11-snap.1154-T1 Valid prediction for snap_scaffold_11-snap.1108-T1 Valid prediction for GeneMark_model.47620_t Valid prediction for GeneMark_model.47590_t Valid prediction for snap_scaffold_11-snap.1132-T1 Valid prediction for GlimmerHMM_glimmerT_27581-T1 Valid prediction for GeneMark_model.47604_t Valid prediction for HiQ_model.g18375.t1 Valid prediction for GlimmerHMM_glimmerT_27563-T1 Valid prediction for GeneMark_model.47630_t Valid prediction for GeneMark_model.47635_t Valid prediction for snap_scaffold_11-snap.1134-T1 Valid prediction for snap_scaffold_11-snap.1117-T1 Valid prediction for GlimmerHMM_glimmerT_27579-T1 Valid prediction for snap_scaffold_11-snap.1152-T1 Valid prediction for snap_scaffold_11-snap.1119-T1 Valid prediction for snap_scaffold_11-snap.1135-T1 Valid prediction for GeneMark_model.47628_t Valid prediction for CodingQuarry_transcript_8013-T1 Valid prediction for GlimmerHMM_glimmerT_27569-T1 Valid prediction for GeneMark_model.47583_t Valid prediction for snap_scaffold_11-snap.1144-T1 Valid prediction for GeneMark_model.47618_t Valid prediction for GeneMark_model.47611_t Valid prediction for GeneMark_model.47614_t Valid prediction for snap_scaffold_11-snap.1129-T1 Valid prediction for snap_scaffold_11-snap.1155-T1 Valid prediction for snap_scaffold_11-snap.1125-T1 Couldn't classify 214683, 214795 Couldn't classify 218858, 218916 Sorry, prediction pasa_asmbl_5469.p1 fails validation. (CAG) AA 214683-214795 GT AGG (GAT) AG 214923-215024 GT AGG (ACA) AG 215164-215224 GT AGG (ATC) AG 215433-215468 GT GGG (CTA) AG 215559-215626 GT AAG (GTT) AG 215738-215823 GT AGG (GTG) AG 215916-216056 GT AGG (GTT) AG 217529-217705 GT CGG (ACC) AG 218080-218132 GT AGG (GGT) AG 218256-218520 GT CAG (TGC) AG 218858-218916 TA GCT -recovered pasa_asmbl_5469.p1, internal, 214923, 215024 -recovered pasa_asmbl_5469.p1, internal, 215164, 215224 -recovered pasa_asmbl_5469.p1, internal, 215433, 215468 -recovered pasa_asmbl_5469.p1, internal, 215559, 215626 -recovered pasa_asmbl_5469.p1, internal, 215738, 215823 -recovered pasa_asmbl_5469.p1, internal, 215916, 216056 -recovered pasa_asmbl_5469.p1, internal, 217529, 217705 -recovered pasa_asmbl_5469.p1, internal, 218080, 218132 -recovered pasa_asmbl_5469.p1, internal, 218256, 218520 Valid prediction for GlimmerHMM_glimmerT_27582-T1 Valid prediction for GeneMark_model.47585_t Valid prediction for GeneMark_model.47613_t Valid prediction for GlimmerHMM_glimmerT_27572-T1 Valid prediction for Augustus_model.g18381.t1 Valid prediction for snap_scaffold_11-snap.1122-T1 Valid prediction for GlimmerHMM_glimmerT_27580-T1 Couldn't classify 154604, 154744 Sorry, prediction CodingQuarry_transcript_8012-T1 fails validation. (ATG) CG 153796-153933 GT AGG (TGC) AG 154118-154204 GT AGG (AAT) AG 154304-154372 GT TGG (GTT) GA 154604-154744 GG AAG -recovered CodingQuarry_transcript_8012-T1, initial, 153796, 153933 -recovered CodingQuarry_transcript_8012-T1, internal, 154118, 154204 -recovered CodingQuarry_transcript_8012-T1, internal, 154304, 154372 Valid prediction for Augustus_model.g18374.t1 Valid prediction for snap_scaffold_11-snap.1130-T1 Valid prediction for snap_scaffold_11-snap.1151-T1 Valid prediction for GeneMark_model.47594_t Valid prediction for GlimmerHMM_glimmerT_27553-T1 Valid prediction for GlimmerHMM_glimmerT_27567-T1 Valid prediction for GlimmerHMM_glimmerT_27551-T1 Valid prediction for GeneMark_model.47596_t Valid prediction for Augustus_model.g18371.t1 Couldn't classify 114334, 114373 Couldn't classify 120517, 120654 Sorry, prediction pasa_asmbl_5449.p1 fails validation. (ACA) AA 114334-114373 GT AGG (CTG) AG 115133-115203 GT AGG (GTG) AG 115314-115402 GT CTG (GCT) AG 115576-115666 GT AAG (GAT) AG 115818-115940 GT AGG (GTG) AG 116443-116530 GT TGG (CGA) AG 117247-117336 GT GGG (GTG) AG 117656-117711 GT TGG (AAA) AG 118595-118680 GT AGG (CTT) AG 119372-119471 GT TGG (GAC) AG 120517-120654 AG GCA -recovered pasa_asmbl_5449.p1, internal, 115133, 115203 -recovered pasa_asmbl_5449.p1, internal, 115314, 115402 -recovered pasa_asmbl_5449.p1, internal, 115576, 115666 -recovered pasa_asmbl_5449.p1, internal, 115818, 115940 -recovered pasa_asmbl_5449.p1, internal, 116443, 116530 -recovered pasa_asmbl_5449.p1, internal, 117247, 117336 -recovered pasa_asmbl_5449.p1, internal, 117656, 117711 -recovered pasa_asmbl_5449.p1, internal, 118595, 118680 -recovered pasa_asmbl_5449.p1, internal, 119372, 119471 Valid prediction for GeneMark_model.47619_t Valid prediction for GlimmerHMM_glimmerT_27552-T1 Couldn't classify 214264, 214353 Sorry, prediction pasa_asmbl_5467.p1 fails validation. (ATG) AA 210539-210562 GT AGG (GTG) AG 211833-211964 GT CTG (TGT) AG 212133-212154 GT CCG (GCA) AG 212296-212384 GT AGG (TAT) AG 212568-212639 GT AAG (GCC) AG 212745-212855 GT AGG (CTT) AG 212969-213040 GT AGG (GCC) AG 213307-213411 GT AGG (CTG) AG 213546-213668 GT AGG (ACT) AG 213925-214027 GT GGG (ATA) AG 214142-214188 GT AGG (CTG) AG 214264-214353 GG CAG -recovered pasa_asmbl_5467.p1, initial, 210539, 210562 -recovered pasa_asmbl_5467.p1, internal, 211833, 211964 -recovered pasa_asmbl_5467.p1, internal, 212133, 212154 -recovered pasa_asmbl_5467.p1, internal, 212296, 212384 -recovered pasa_asmbl_5467.p1, internal, 212568, 212639 -recovered pasa_asmbl_5467.p1, internal, 212745, 212855 -recovered pasa_asmbl_5467.p1, internal, 212969, 213040 -recovered pasa_asmbl_5467.p1, internal, 213307, 213411 -recovered pasa_asmbl_5467.p1, internal, 213546, 213668 -recovered pasa_asmbl_5467.p1, internal, 213925, 214027 -recovered pasa_asmbl_5467.p1, internal, 214142, 214188 Valid prediction for HiQ_model.g18384.t1 Valid prediction for GlimmerHMM_glimmerT_27578-T1 Valid prediction for GeneMark_model.47631_t Valid prediction for snap_scaffold_11-snap.1146-T1 Valid prediction for snap_scaffold_11-snap.1136-T1 Valid prediction for Augustus_model.g18377.t1 Valid prediction for GeneMark_model.47634_t Valid prediction for GeneMark_model.47621_t Valid prediction for GeneMark_model.47643_t Valid prediction for snap_scaffold_11-snap.1120-T1 Valid prediction for snap_scaffold_11-snap.1123-T1 Valid prediction for GeneMark_model.47592_t Valid prediction for CodingQuarry_transcript_8018-T1 Valid prediction for GeneMark_model.47609_t Couldn't classify 199769, 199783 Couldn't classify 200338, 200447 Sorry, prediction pasa_asmbl_5462.p1 fails validation. (TCG) CT 199769-199783 GT AGG (GAG) AG 199877-200189 GT AGG (GTG) AG 200338-200447 AT GGA -recovered pasa_asmbl_5462.p1, internal, 199877, 200189 Valid prediction for GeneMark_model.47633_t Valid prediction for GeneMark_model.47587_t Valid prediction for pasa_asmbl_5463.p1 Valid prediction for GeneMark_model.47608_t Valid prediction for GeneMark_model.47639_t Valid prediction for snap_scaffold_11-snap.1138-T1 Valid prediction for CodingQuarry_transcript_8010-T1 Valid prediction for GeneMark_model.47597_t Valid prediction for GeneMark_model.47625_t Valid prediction for HiQ_model.g18386.t1 Valid prediction for GlimmerHMM_glimmerT_27568-T1 Valid prediction for GlimmerHMM_glimmerT_27583-T1 Valid prediction for snap_scaffold_11-snap.1114-T1 Valid prediction for snap_scaffold_11-snap.1128-T1 Valid prediction for CodingQuarry_transcript_8017-T1 Valid prediction for snap_scaffold_11-snap.1115-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_27575-T1 Valid prediction for snap_scaffold_11-snap.1150-T1 Valid prediction for GeneMark_model.47605_t Valid prediction for snap_scaffold_11-snap.1112-T1 Valid prediction for GeneMark_model.47584_t Valid prediction for GeneMark_model.47641_t Valid prediction for GlimmerHMM_glimmerT_27560-T1 Valid prediction for GlimmerHMM_glimmerT_27573-T1 Valid prediction for GlimmerHMM_glimmerT_27557-T1 Valid prediction for snap_scaffold_11-snap.1147-T1 Valid prediction for snap_scaffold_11-snap.1127-T1 Valid prediction for GeneMark_model.47612_t Valid prediction for GeneMark_model.47637_t Valid prediction for GeneMark_model.47599_t Valid prediction for GlimmerHMM_glimmerT_27555-T1 Valid prediction for snap_scaffold_11-snap.1133-T1 Valid prediction for GeneMark_model.47622_t Valid prediction for HiQ_model.g18382.t1 Valid prediction for snap_scaffold_11-snap.1110-T1 Valid prediction for GeneMark_model.47626_t Valid prediction for GeneMark_model.47642_t Valid prediction for GeneMark_model.47638_t Valid prediction for snap_scaffold_11-snap.1139-T1 Valid prediction for pasa_asmbl_6590.p1 Valid prediction for GeneMark_model.47617_t Valid prediction for GeneMark_model.47607_t Valid prediction for snap_scaffold_11-snap.1126-T1 Valid prediction for snap_scaffold_11-snap.1121-T1 Valid prediction for GeneMark_model.47601_t Valid prediction for GeneMark_model.47624_t Valid prediction for Augustus_model.g18373.t1 Valid prediction for pasa_asmbl_6585.p1 Valid prediction for snap_scaffold_11-snap.1145-T1 Valid prediction for snap_scaffold_11-snap.1118-T1 Valid prediction for GeneMark_model.47598_t Valid prediction for Augustus_model.g18383.t1 Valid prediction for GeneMark_model.47591_t Valid prediction for Augustus_model.g18380.t1 Couldn't classify 37253, 37285 Sorry, prediction pasa_asmbl_6594.p1 fails validation. (GAA) TG 37253-37285 GT AGG (GTG) AG 37386-37620 GT AGG (GCG) AG 37747-37986 GT AGG (GTA) AG 38142-38269 GT AGG (GAT) AG 38382-38529 GT GGG (TGG) AG 38610-38885 GT GGG (GGA) AG 39079-39366 GT AGG (ATC) AG 39600-39751 GT AGG (GTG) AG 40331-40541 GT CCG (GTC) AG 40706-41010 AC GAA add_exon() Sorry, pasa_asmbl_6594.p1 37747-37986-terminal-1 is invalid. -recovered pasa_asmbl_6594.p1, terminal, 37747, 37986 -recovered pasa_asmbl_6594.p1, terminal, 40706, 41010 -recovered pasa_asmbl_6594.p1, internal, 37386, 37620 -recovered pasa_asmbl_6594.p1, internal, 37747, 37986 -recovered pasa_asmbl_6594.p1, internal, 38142, 38269 -recovered pasa_asmbl_6594.p1, internal, 38382, 38529 -recovered pasa_asmbl_6594.p1, internal, 38610, 38885 -recovered pasa_asmbl_6594.p1, internal, 39079, 39366 -recovered pasa_asmbl_6594.p1, internal, 39600, 39751 -recovered pasa_asmbl_6594.p1, internal, 40331, 40541 Valid prediction for GlimmerHMM_glimmerT_27558-T1 Valid prediction for GeneMark_model.47636_t Valid prediction for snap_scaffold_11-snap.1137-T1 Valid prediction for GeneMark_model.47615_t Couldn't classify 78177, 78327 Sorry, prediction pasa_asmbl_6581.p1 fails validation. (GGC) GT 78177-78327 GT GGG (AAC) AG 78477-78617 GT CAG (CTC) AG 78775-78882 GT AGG (GTA) AG 79128-79214 GT AAG (GTC) AG 79440-79609 GA AAG -recovered pasa_asmbl_6581.p1, terminal, 79440, 79609 -recovered pasa_asmbl_6581.p1, internal, 78477, 78617 -recovered pasa_asmbl_6581.p1, internal, 78775, 78882 -recovered pasa_asmbl_6581.p1, internal, 79128, 79214 Valid prediction for GeneMark_model.47629_t Valid prediction for GlimmerHMM_glimmerT_27577-T1 Valid prediction for GlimmerHMM_glimmerT_27561-T1 Valid prediction for GlimmerHMM_glimmerT_27574-T1 Valid prediction for snap_scaffold_11-snap.1158-T1 Valid prediction for GeneMark_model.47632_t Valid prediction for snap_scaffold_11-snap.1107-T1 Valid prediction for GeneMark_model.47595_t Valid prediction for CodingQuarry_transcript_8014-T1 Valid prediction for snap_scaffold_11-snap.1149-T1 Valid prediction for GeneMark_model.47588_t Valid prediction for GlimmerHMM_glimmerT_27571-T1 Valid prediction for GeneMark_model.47593_t Valid prediction for snap_scaffold_11-snap.1124-T1 Valid prediction for GlimmerHMM_glimmerT_27559-T1 Valid prediction for GeneMark_model.47603_t Valid prediction for GlimmerHMM_glimmerT_27562-T1 Valid prediction for snap_scaffold_11-snap.1156-T1 Couldn't classify 31178, 31230 Couldn't classify 32153, 32311 Sorry, prediction pasa_asmbl_7277.p1 fails validation. (GTC) AC 31178-31230 GT AAG (GAT) AG 31496-31605 GC AGG (AGA) AG 31789-31952 GT AGG (CTG) AG 32153-32311 CA CTC -recovered pasa_asmbl_7277.p1, internal, 31496, 31605 -recovered pasa_asmbl_7277.p1, internal, 31789, 31952 Valid prediction for snap_scaffold_11-snap.1131-T1 Valid prediction for GeneMark_model.47586_t Valid prediction for snap_scaffold_11-snap.1141-T1 Couldn't classify 75163, 75344 Couldn't classify 77890, 78010 Sorry, prediction pasa_asmbl_7347.p1 fails validation. (CCC) CC 75163-75344 GT AGG (GAG) AG 75600-75741 GT AGG (GTG) AG 75966-76107 GT GGG (CGG) AG 77006-77139 GT ATG (CTG) AG 77264-77439 GC AAG (AAG) AG 77651-77698 GT GTG (CGG) AG 77890-78010 GG ACG -recovered pasa_asmbl_7347.p1, internal, 75600, 75741 -recovered pasa_asmbl_7347.p1, internal, 75966, 76107 -recovered pasa_asmbl_7347.p1, internal, 77006, 77139 -recovered pasa_asmbl_7347.p1, internal, 77264, 77439 -recovered pasa_asmbl_7347.p1, internal, 77651, 77698 Valid prediction for GlimmerHMM_glimmerT_27570-T1 Valid prediction for GeneMark_model.47600_t Valid prediction for CodingQuarry_transcript_8016-T1 Valid prediction for snap_scaffold_11-snap.1113-T1 Valid prediction for CodingQuarry_transcript_8015-T1 Valid prediction for GlimmerHMM_glimmerT_27576-T1 Valid prediction for snap_scaffold_11-snap.1116-T1 Valid prediction for GeneMark_model.47610_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10746, rend_intergenic: 4354 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14418, rend_intergenic: 12575 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26665, rend_intergenic: 20794 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34003, rend_intergenic: 30661 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37494, rend_intergenic: 35600 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61312, rend_intergenic: 52754 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79774, rend_intergenic: 76248 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93410, rend_intergenic: 85303 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99404, rend_intergenic: 94675 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131578, rend_intergenic: 123513 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 137746, rend_intergenic: 136613 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139350, rend_intergenic: 137916 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 146488, rend_intergenic: 142790 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165027, rend_intergenic: 156472 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194961, rend_intergenic: 188569 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209906, rend_intergenic: 206556 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219033, rend_intergenic: 212165 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 221624 -exon list size: 905 building trellis 0.1 0.2 0.3 0.4 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.6 99.7 99.8 99.9 -found 43 predictions from path traversal Error with prediction: snap lend_intergenic: 10746, rend_intergenic: 4354 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14418, rend_intergenic: 12575 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26665, rend_intergenic: 20794 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34003, rend_intergenic: 30661 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37494, rend_intergenic: 35600 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61312, rend_intergenic: 52754 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79774, rend_intergenic: 76248 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93410, rend_intergenic: 85303 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99404, rend_intergenic: 94675 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131578, rend_intergenic: 123513 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 137746, rend_intergenic: 136613 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139350, rend_intergenic: 137916 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 146488, rend_intergenic: 142790 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165027, rend_intergenic: 156472 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194961, rend_intergenic: 188569 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209906, rend_intergenic: 206556 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219033, rend_intergenic: 212165 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 21 predictions persist after filtering for low support