-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_3263036-3465271

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_27365-T1
Valid prediction for HiQ_model.g18256.t1
Valid prediction for GlimmerHMM_glimmerT_27369-T1
Valid prediction for snap_scaffold_11-snap.851-T1
Valid prediction for GeneMark_model.47239_t
Valid prediction for GlimmerHMM_glimmerT_27366-T1
Valid prediction for Augustus_model.g18259.t1
Valid prediction for GlimmerHMM_glimmerT_27349-T1
Couldn't classify 87700, 87765
Sorry, prediction pasa_asmbl_5380.p1 fails validation.
(CTG)	 TG	87700-87765	GT	AGG
(TTT)	 AG	87912-87996	GT	AGG
(GTT)	 AG	88520-88632	GT	AGG
(GTC)	 AG	88865-89067	GT	AGG
(GAT)	 AG	89312-89418	GT	CCG
(TGT)	 AG	89540-89687	GT	AGG
(TGG)	 AG	90090-90445	GT	TGG
(ATG)	 AG	90678-90889	GT	AGG
(CCC)	 AG	90988-91110	GT	AGG
(GCT)	 AG	91198-91460	GT	AGG
(GGC)	 AG	91686-91794	GT	TGG
(GGC)	 AG	91889-92062	TG	AGT
add_exon() Sorry, pasa_asmbl_5380.p1 90678-90889-initial-1 is invalid.
-recovered pasa_asmbl_5380.p1, initial, 90678, 90889
-recovered pasa_asmbl_5380.p1, terminal, 91889, 92062
-recovered pasa_asmbl_5380.p1, internal, 87912, 87996
-recovered pasa_asmbl_5380.p1, internal, 88520, 88632
-recovered pasa_asmbl_5380.p1, internal, 88865, 89067
-recovered pasa_asmbl_5380.p1, internal, 89312, 89418
-recovered pasa_asmbl_5380.p1, internal, 89540, 89687
-recovered pasa_asmbl_5380.p1, internal, 90090, 90445
-recovered pasa_asmbl_5380.p1, internal, 90678, 90889
-recovered pasa_asmbl_5380.p1, internal, 90988, 91110
-recovered pasa_asmbl_5380.p1, internal, 91198, 91460
-recovered pasa_asmbl_5380.p1, internal, 91686, 91794
Valid prediction for Augustus_model.g18265.t1
Valid prediction for GeneMark_model.47284_t
Valid prediction for Augustus_model.g18258.t1
Valid prediction for GeneMark_model.47265_t
Valid prediction for GeneMark_model.47272_t
Valid prediction for Augustus_model.g18266.t1
Valid prediction for GeneMark_model.47257_t
Valid prediction for GlimmerHMM_glimmerT_27368-T1
Valid prediction for GlimmerHMM_glimmerT_27375-T1
Valid prediction for GlimmerHMM_glimmerT_27377-T1
Valid prediction for GeneMark_model.47259_t
Valid prediction for GeneMark_model.47280_t
Valid prediction for GeneMark_model.47261_t
Valid prediction for GlimmerHMM_glimmerT_27361-T1
Valid prediction for snap_scaffold_11-snap.842-T1
Valid prediction for GlimmerHMM_glimmerT_27381-T1
Valid prediction for snap_scaffold_11-snap.827-T1
Valid prediction for snap_scaffold_11-snap.862-T1
Valid prediction for snap_scaffold_11-snap.836-T1
Valid prediction for GeneMark_model.47278_t
Valid prediction for GlimmerHMM_glimmerT_27359-T1
Valid prediction for GeneMark_model.47263_t
Valid prediction for GeneMark_model.47288_t
Valid prediction for GeneMark_model.47248_t
Valid prediction for GeneMark_model.47274_t
Valid prediction for GeneMark_model.47252_t
Valid prediction for CodingQuarry_transcript_7986-T1
Valid prediction for snap_scaffold_11-snap.830-T1
Valid prediction for GeneMark_model.47270_t
Valid prediction for GlimmerHMM_glimmerT_27374-T1
Valid prediction for Augustus_model.g18262.t1
Valid prediction for snap_scaffold_11-snap.822-T1
Valid prediction for GlimmerHMM_glimmerT_27355-T1
Valid prediction for GeneMark_model.47245_t
Valid prediction for snap_scaffold_11-snap.832-T1
Valid prediction for GeneMark_model.47277_t
Valid prediction for snap_scaffold_11-snap.849-T1
Valid prediction for GlimmerHMM_glimmerT_27376-T1
Valid prediction for GlimmerHMM_glimmerT_27371-T1
Valid prediction for GlimmerHMM_glimmerT_27353-T1
Couldn't classify 42715, 42746
Sorry, prediction pasa_asmbl_5377.p1 fails validation.
(ATG)	 AA	40595-40669	GT	ATG
(GGG)	 AG	42036-42166	GT	TGG
(TTT)	 AG	42424-42497	GT	AGG
(GCA)	 AG	42715-42746	GC	GGG
-recovered pasa_asmbl_5377.p1, initial, 40595, 40669
-recovered pasa_asmbl_5377.p1, internal, 42036, 42166
-recovered pasa_asmbl_5377.p1, internal, 42424, 42497
-recovered pasa_asmbl_5377.p1, internal, 42715, 42746
Valid prediction for GlimmerHMM_glimmerT_27380-T1
Valid prediction for Augustus_model.g18269.t1
Valid prediction for GlimmerHMM_glimmerT_27354-T1
Valid prediction for Augustus_model.g18252.t1
Valid prediction for GlimmerHMM_glimmerT_27384-T1
Valid prediction for Augustus_model.g18261.t1
Couldn't classify 95987, 96049
Sorry, prediction pasa_asmbl_5383.p1 fails validation.
(ATG)	 TC	94964-95125	GT	CTG
(CTG)	 AG	95223-95327	GT	AGG
(GAG)	 AG	95511-95666	GT	GGG
(GGA)	 AG	95763-95828	GT	AGG
(TGT)	 AG	95987-96049	GT	AGG
-recovered pasa_asmbl_5383.p1, initial, 94964, 95125
-recovered pasa_asmbl_5383.p1, internal, 95223, 95327
-recovered pasa_asmbl_5383.p1, internal, 95511, 95666
-recovered pasa_asmbl_5383.p1, internal, 95763, 95828
-recovered pasa_asmbl_5383.p1, internal, 95987, 96049
Valid prediction for snap_scaffold_11-snap.864-T1
Valid prediction for snap_scaffold_11-snap.840-T1
Valid prediction for snap_scaffold_11-snap.824-T1
Valid prediction for Augustus_model.g18264.t1
Valid prediction for GlimmerHMM_glimmerT_27348-T1
Valid prediction for GlimmerHMM_glimmerT_27364-T1
Valid prediction for GeneMark_model.47241_t
Valid prediction for snap_scaffold_11-snap.857-T1
Valid prediction for GlimmerHMM_glimmerT_27357-T1
Valid prediction for Augustus_model.g18254.t1
Valid prediction for snap_scaffold_11-snap.853-T1
Sorry, intron length (7) is less than minimum required (10)
Sorry, intron length (7) is less than minimum required (10)
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_27373-T1
Valid prediction for Augustus_model.g18250.t1
Couldn't classify 146035, 146232
Sorry, prediction pasa_asmbl_5389.p1 fails validation.
(GAC)	 CA	146035-146232	GT	TGG
(GTG)	 AG	146744-146845	GT	AGG
(CTG)	 AG	148441-148533	GT	AGG
(CTT)	 AG	149148-149278	GT	CGG
(TTT)	 AG	149394-149453	GT	AGG
(CAT)	 AG	149774-149882	GT	AGG
(TTG)	 AG	150009-150062	GT	CGG
(GTC)	 AG	150452-150502	GT	AGG
(GTG)	 AG	151051-151170	GT	AGG
(GTG)	 AG	151680-151807	GT	CCG
(GGC)	 AG	152008-152109	GT	CGG
(CGA)	 AG	152579-152678	CG	AAC
-recovered pasa_asmbl_5389.p1, terminal, 152579, 152678
-recovered pasa_asmbl_5389.p1, internal, 146744, 146845
-recovered pasa_asmbl_5389.p1, internal, 148441, 148533
-recovered pasa_asmbl_5389.p1, internal, 149148, 149278
-recovered pasa_asmbl_5389.p1, internal, 149394, 149453
-recovered pasa_asmbl_5389.p1, internal, 149774, 149882
-recovered pasa_asmbl_5389.p1, internal, 150009, 150062
-recovered pasa_asmbl_5389.p1, internal, 150452, 150502
-recovered pasa_asmbl_5389.p1, internal, 151051, 151170
-recovered pasa_asmbl_5389.p1, internal, 151680, 151807
-recovered pasa_asmbl_5389.p1, internal, 152008, 152109
Valid prediction for snap_scaffold_11-snap.856-T1
Valid prediction for GeneMark_model.47255_t
Valid prediction for Augustus_model.g18255.t1
Valid prediction for snap_scaffold_11-snap.850-T1
Valid prediction for GeneMark_model.47282_t
Valid prediction for GlimmerHMM_glimmerT_27360-T1
Valid prediction for Augustus_model.g18257.t1
Valid prediction for GlimmerHMM_glimmerT_27382-T1
Valid prediction for GeneMark_model.47276_t
Valid prediction for snap_scaffold_11-snap.835-T1
Valid prediction for GlimmerHMM_glimmerT_27362-T1
Couldn't classify 131126, 131626
Sorry, prediction pasa_asmbl_5387.p1 fails validation.
(GCT)	 GG	131126-131626	TT	GAT
Valid prediction for Augustus_model.g18267.t1
Valid prediction for snap_scaffold_11-snap.841-T1
Valid prediction for snap_scaffold_11-snap.826-T1
Valid prediction for snap_scaffold_11-snap.848-T1
Valid prediction for GeneMark_model.47234_t
Valid prediction for snap_scaffold_11-snap.847-T1
Valid prediction for snap_scaffold_11-snap.845-T1
Valid prediction for Augustus_model.g18268.t1
Valid prediction for Augustus_model.g18253.t1
Couldn't classify 1258, 1409
Couldn't classify 6468, 6596
Sorry, prediction pasa_asmbl_5376.p1 fails validation.
(TGC)	 GA	1258-1409	GT	ATG
(TTA)	 AG	3115-3188	GT	AGG
(TCT)	 AG	3762-3865	GT	TGG
(ACC)	 AG	4199-4339	GT	TGG
(GAG)	 AG	6468-6596	GT	TGG
add_exon() Sorry, pasa_asmbl_5376.p1 3115-3188-terminal-2 is invalid.
-recovered pasa_asmbl_5376.p1, terminal, 3115, 3188
-recovered pasa_asmbl_5376.p1, internal, 3115, 3188
-recovered pasa_asmbl_5376.p1, internal, 3762, 3865
-recovered pasa_asmbl_5376.p1, internal, 4199, 4339
-recovered pasa_asmbl_5376.p1, internal, 6468, 6596
Valid prediction for GeneMark_model.47236_t
Valid prediction for GeneMark_model.47253_t
Valid prediction for GlimmerHMM_glimmerT_27379-T1
Valid prediction for GeneMark_model.47286_t
Valid prediction for snap_scaffold_11-snap.828-T1
Valid prediction for GeneMark_model.47251_t
Valid prediction for GlimmerHMM_glimmerT_27378-T1
Valid prediction for GlimmerHMM_glimmerT_27367-T1
Valid prediction for Augustus_model.g18270.t1
Valid prediction for GlimmerHMM_glimmerT_27370-T1
Valid prediction for GeneMark_model.47290_t
Valid prediction for GeneMark_model.47267_t
Valid prediction for snap_scaffold_11-snap.858-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.846-T1
Valid prediction for snap_scaffold_11-snap.834-T1
Valid prediction for GeneMark_model.47256_t
Valid prediction for pasa_asmbl_6525.p1
Valid prediction for GeneMark_model.47254_t
Valid prediction for snap_scaffold_11-snap.859-T1
Valid prediction for GlimmerHMM_glimmerT_27383-T1
Valid prediction for Augustus_model.g18249.t1
Valid prediction for GeneMark_model.47293_t
Valid prediction for snap_scaffold_11-snap.825-T1
Valid prediction for snap_scaffold_11-snap.837-T1
Valid prediction for GlimmerHMM_glimmerT_27350-T1
Valid prediction for GeneMark_model.47266_t
Valid prediction for snap_scaffold_11-snap.839-T1
Valid prediction for GeneMark_model.47285_t
Valid prediction for GeneMark_model.47260_t
Valid prediction for snap_scaffold_11-snap.854-T1
Valid prediction for GeneMark_model.47240_t
Valid prediction for GeneMark_model.47247_t
Valid prediction for GeneMark_model.47275_t
Valid prediction for GeneMark_model.47283_t
Valid prediction for snap_scaffold_11-snap.852-T1
Valid prediction for GeneMark_model.47273_t
Valid prediction for Augustus_model.g18260.t1
Valid prediction for GeneMark_model.47289_t
Valid prediction for GeneMark_model.47250_t
Valid prediction for snap_scaffold_11-snap.863-T1
Valid prediction for GeneMark_model.47258_t
Valid prediction for GeneMark_model.47232_t
Valid prediction for snap_scaffold_11-snap.823-T1
Valid prediction for GeneMark_model.47235_t
Valid prediction for GeneMark_model.47243_t
Valid prediction for Augustus_model.g18251.t1
Valid prediction for GeneMark_model.47292_t
Valid prediction for snap_scaffold_11-snap.855-T1
Valid prediction for snap_scaffold_11-snap.833-T1
Valid prediction for GeneMark_model.47279_t
Valid prediction for GlimmerHMM_glimmerT_27356-T1
Valid prediction for snap_scaffold_11-snap.829-T1
Valid prediction for GeneMark_model.47271_t
Valid prediction for GeneMark_model.47269_t
Valid prediction for GlimmerHMM_glimmerT_27351-T1
Valid prediction for snap_scaffold_11-snap.844-T1
Valid prediction for snap_scaffold_11-snap.861-T1
Valid prediction for Augustus_model.g18263.t1
Valid prediction for snap_scaffold_11-snap.831-T1
Valid prediction for snap_scaffold_11-snap.860-T1
Valid prediction for snap_scaffold_11-snap.843-T1
Valid prediction for GlimmerHMM_glimmerT_27363-T1
Valid prediction for GeneMark_model.47238_t
Valid prediction for GlimmerHMM_glimmerT_27385-T1
Valid prediction for GeneMark_model.47237_t
Valid prediction for GeneMark_model.47264_t
Valid prediction for GeneMark_model.47249_t
Valid prediction for GlimmerHMM_glimmerT_27372-T1
Valid prediction for GeneMark_model.47281_t
Valid prediction for GeneMark_model.47242_t
Valid prediction for GeneMark_model.47246_t
Valid prediction for CodingQuarry_transcript_7985-T1
Valid prediction for GeneMark_model.47287_t
Valid prediction for GlimmerHMM_glimmerT_27352-T1
Valid prediction for GeneMark_model.47233_t
Valid prediction for GeneMark_model.47262_t
Valid prediction for GlimmerHMM_glimmerT_27358-T1
Valid prediction for GeneMark_model.47244_t
Valid prediction for snap_scaffold_11-snap.838-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6595, rend_intergenic: 3667  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19913, rend_intergenic: 7811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29916, rend_intergenic: 20517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37518, rend_intergenic: 30844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45450, rend_intergenic: 41628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46678, rend_intergenic: 45614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51127, rend_intergenic: 47173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53822, rend_intergenic: 52199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78957, rend_intergenic: 60234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90498, rend_intergenic: 87718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109588, rend_intergenic: 103039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141226, rend_intergenic: 136086  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152678, rend_intergenic: 142136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184297, rend_intergenic: 167378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197608, rend_intergenic: 184532  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 37389, rend_intergenic: 37386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 202236
-exon list size: 867


building trellis

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43.5    
43.6    
43.7    
43.8    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.7    
99.8    
99.9    
-found 45 predictions from path traversal
Error with prediction: snap lend_intergenic: 6595, rend_intergenic: 3667  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19913, rend_intergenic: 7811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29916, rend_intergenic: 20517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37518, rend_intergenic: 30844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45450, rend_intergenic: 41628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46678, rend_intergenic: 45614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51127, rend_intergenic: 47173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53822, rend_intergenic: 52199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78957, rend_intergenic: 60234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90498, rend_intergenic: 87718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109588, rend_intergenic: 103039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141226, rend_intergenic: 136086  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152678, rend_intergenic: 142136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184297, rend_intergenic: 167378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197608, rend_intergenic: 184532  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 37389, rend_intergenic: 37386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support