-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_2352713-2530626

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.46950_t
Valid prediction for snap_scaffold_11-snap.610-T1
Valid prediction for GeneMark_model.46963_t
Valid prediction for GeneMark_model.46970_t
Valid prediction for GlimmerHMM_glimmerT_27204-T1
Valid prediction for GeneMark_model.46986_t
Valid prediction for snap_scaffold_11-snap.593-T1
Valid prediction for GeneMark_model.46990_t
Valid prediction for GeneMark_model.46972_t
Valid prediction for snap_scaffold_11-snap.605-T1
Valid prediction for snap_scaffold_11-snap.604-T1
Valid prediction for snap_scaffold_11-snap.597-T1
Valid prediction for GlimmerHMM_glimmerT_27215-T1
Valid prediction for snap_scaffold_11-snap.619-T1
Valid prediction for GeneMark_model.46993_t
Valid prediction for snap_scaffold_11-snap.600-T1
Valid prediction for GeneMark_model.46940_t
Valid prediction for snap_scaffold_11-snap.596-T1
Valid prediction for pasa_asmbl_5328.p1
Valid prediction for snap_scaffold_11-snap.617-T1
Valid prediction for GeneMark_model.46965_t
Valid prediction for HiQ_model.g18158.t1
Valid prediction for GlimmerHMM_glimmerT_27197-T1
Valid prediction for snap_scaffold_11-snap.592-T1
Valid prediction for snap_scaffold_11-snap.595-T1
Valid prediction for snap_scaffold_11-snap.601-T1
Valid prediction for snap_scaffold_11-snap.625-T1
Valid prediction for CodingQuarry_transcript_7967-T1
Valid prediction for GlimmerHMM_glimmerT_27199-T1
Valid prediction for snap_scaffold_11-snap.616-T1
Valid prediction for GeneMark_model.46942_t
Valid prediction for GeneMark_model.46960_t
Valid prediction for GlimmerHMM_glimmerT_27200-T1
Valid prediction for snap_scaffold_11-snap.608-T1
Valid prediction for GeneMark_model.46966_t
Valid prediction for HiQ_model.g18170.t1
Valid prediction for snap_scaffold_11-snap.615-T1
Valid prediction for HiQ_model.g18173.t1
Valid prediction for GeneMark_model.46952_t
Valid prediction for GeneMark_model.46954_t
Valid prediction for snap_scaffold_11-snap.618-T1
Valid prediction for GlimmerHMM_glimmerT_27198-T1
Valid prediction for GlimmerHMM_glimmerT_27224-T1
Valid prediction for Augustus_model.g18159.t1
Valid prediction for GeneMark_model.46946_t
Valid prediction for snap_scaffold_11-snap.613-T1
Valid prediction for GeneMark_model.46975_t
Valid prediction for GlimmerHMM_glimmerT_27223-T1
Valid prediction for GeneMark_model.46983_t
Valid prediction for snap_scaffold_11-snap.622-T1
Valid prediction for GlimmerHMM_glimmerT_27208-T1
Valid prediction for GeneMark_model.46980_t
Valid prediction for GeneMark_model.46968_t
Valid prediction for GlimmerHMM_glimmerT_27202-T1
Valid prediction for GeneMark_model.46948_t
Valid prediction for GeneMark_model.46944_t
Valid prediction for GeneMark_model.46953_t
Valid prediction for GeneMark_model.46985_t
Valid prediction for snap_scaffold_11-snap.628-T1
Valid prediction for Augustus_model.g18174.t1
Valid prediction for GeneMark_model.46977_t
Valid prediction for snap_scaffold_11-snap.623-T1
Valid prediction for GlimmerHMM_glimmerT_27221-T1
Valid prediction for GeneMark_model.46956_t
Valid prediction for GlimmerHMM_glimmerT_27213-T1
Valid prediction for GeneMark_model.46959_t
Valid prediction for GlimmerHMM_glimmerT_27209-T1
Valid prediction for GeneMark_model.46991_t
Couldn't classify 128393, 128512
Sorry, prediction pasa_asmbl_6293.p1 fails validation.
(ATG)	 AG	127373-127632	GT	GGG
(AGC)	 AG	127847-127960	GT	TGG
(GGG)	 AG	128187-128259	GT	AGG
(TCT)	 AG	128393-128512	GT	AGG
-recovered pasa_asmbl_6293.p1, initial, 127373, 127632
-recovered pasa_asmbl_6293.p1, internal, 127373, 127632
-recovered pasa_asmbl_6293.p1, internal, 127847, 127960
-recovered pasa_asmbl_6293.p1, internal, 128187, 128259
-recovered pasa_asmbl_6293.p1, internal, 128393, 128512

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_27203-T1
Valid prediction for GeneMark_model.46939_t
Valid prediction for snap_scaffold_11-snap.599-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.46945_t
Valid prediction for snap_scaffold_11-snap.606-T1
Valid prediction for GlimmerHMM_glimmerT_27222-T1
Valid prediction for GeneMark_model.46979_t
Valid prediction for GeneMark_model.46971_t
Valid prediction for GlimmerHMM_glimmerT_27216-T1
Valid prediction for Augustus_model.g18171.t1
Valid prediction for snap_scaffold_11-snap.602-T1
Valid prediction for snap_scaffold_11-snap.630-T1
Valid prediction for HiQ_model.g18168.t1
Valid prediction for Augustus_model.g18172.t1
Valid prediction for GlimmerHMM_glimmerT_27201-T1
Valid prediction for GeneMark_model.46981_t
Valid prediction for CodingQuarry_transcript_7965-T1
Valid prediction for GeneMark_model.46943_t
Valid prediction for GlimmerHMM_glimmerT_27220-T1
Valid prediction for GeneMark_model.46947_t
Valid prediction for GlimmerHMM_glimmerT_27205-T1
Valid prediction for Augustus_model.g18160.t1
Valid prediction for GeneMark_model.46988_t
Valid prediction for snap_scaffold_11-snap.603-T1
Valid prediction for GeneMark_model.46951_t
Valid prediction for pasa_asmbl_6483.p2
Valid prediction for Augustus_model.g18162.t1
Valid prediction for Augustus_model.g18161.t1
Valid prediction for snap_scaffold_11-snap.609-T1
Valid prediction for snap_scaffold_11-snap.611-T1
Valid prediction for Augustus_model.g18169.t1
Valid prediction for GlimmerHMM_glimmerT_27214-T1
Valid prediction for GeneMark_model.46982_t
Couldn't classify 32197, 32232
Couldn't classify 32550, 32843
Sorry, prediction pasa_asmbl_7281.p1 fails validation.
(GAC)	 AT	32197-32232	GT	AAG
(AAA)	 AG	32550-32843	GA	TGG
Valid prediction for snap_scaffold_11-snap.632-T1
Valid prediction for GeneMark_model.46984_t
Valid prediction for CodingQuarry_transcript_7966-T1
Valid prediction for Augustus_model.g18165.t1
Valid prediction for snap_scaffold_11-snap.607-T1
Valid prediction for Augustus_model.g18163.t1
Valid prediction for snap_scaffold_11-snap.629-T1
Valid prediction for GeneMark_model.46964_t
Valid prediction for GeneMark_model.46941_t
Couldn't classify 58215, 58422
Sorry, prediction pasa_asmbl_6482.p1 fails validation.
(TGC)	 GC	58215-58422	GT	CGG
(GTC)	 AG	58502-58590	GT	TGG
(ACA)	 AG	59465-59662	GT	GAG
-recovered pasa_asmbl_6482.p1, terminal, 59465, 59662
-recovered pasa_asmbl_6482.p1, internal, 58502, 58590
-recovered pasa_asmbl_6482.p1, internal, 59465, 59662
Valid prediction for GlimmerHMM_glimmerT_27211-T1
Valid prediction for GeneMark_model.46987_t
Valid prediction for GlimmerHMM_glimmerT_27217-T1
Valid prediction for GeneMark_model.46957_t
Valid prediction for GeneMark_model.46976_t
Couldn't classify 101366, 101467
Couldn't classify 103311, 103562
Sorry, prediction pasa_asmbl_6475.p1 fails validation.
(GCG)	 AG	101366-101467	GT	AGG
(ATT)	 AG	102043-102240	GT	GGG
(GAG)	 AG	103311-103562	CT	CCC
-recovered pasa_asmbl_6475.p1, internal, 101366, 101467
-recovered pasa_asmbl_6475.p1, internal, 102043, 102240
Valid prediction for snap_scaffold_11-snap.627-T1
Valid prediction for GlimmerHMM_glimmerT_27212-T1
Valid prediction for GeneMark_model.46955_t
Valid prediction for snap_scaffold_11-snap.612-T1
Valid prediction for GeneMark_model.46992_t
Valid prediction for GlimmerHMM_glimmerT_27207-T1
Valid prediction for snap_scaffold_11-snap.631-T1
Valid prediction for pasa_asmbl_6474.p1
Valid prediction for snap_scaffold_11-snap.621-T1
Valid prediction for snap_scaffold_11-snap.594-T1
Valid prediction for GeneMark_model.46961_t
Valid prediction for GeneMark_model.46962_t
Couldn't classify 66047, 66701
Sorry, prediction pasa_asmbl_6478.p1 fails validation.
(AGA)	 GC	66047-66701	GT	TGG
(TGG)	 AG	67116-67277	GT	TGG
(CCC)	 AG	67558-67674	GT	AGG
(AGA)	 AG	67874-67998	GT	AGG
(TCC)	 AG	68105-68209	GT	AGG
(GAG)	 AG	68816-68947	GT	AGG
(TTC)	 AG	69055-69161	GT	AAG
(GCA)	 AG	69327-69459	GT	AGG
(GCT)	 AG	70145-70241	GT	AGG
(AGC)	 AG	70654-70838	GT	AGG
(GAG)	 AG	70956-71024	GT	AGG
(ACT)	 AG	71139-71176	GT	CTG
(GTT)	 AG	71250-71340	GT	AGG
(GCG)	 AG	71916-71984	GT	AGG
(ACT)	 AG	72130-72167	GT	AGG
(CGT)	 AG	72932-73022	GT	AGG
(GCT)	 AG	73209-73277	GT	AGG
(TCC)	 AG	73367-73404	GT	AAG
(GAT)	 AG	74464-74554	GT	AGG
(GCT)	 AG	74768-74877	GT	CAG
(GCT)	 AG	74981-75179	GT	AGG
(GTA)	 AG	75270-75310	GT	GTG
(GTT)	 AG	75424-75514	GT	ACG
(GAT)	 AG	76877-76963	GT	AGG
(GAG)	 AG	79404-79493	GC	AGG
(GAC)	 AG	79613-79741	GT	CGG
(GTT)	 AG	79842-79931	GT	CGG
(GAG)	 AG	80138-80230	GT	AGG
(ATG)	 AG	80317-80385	GT	ACG
(TTG)	 AG	80493-80576	GT	AGG
(CTG)	 AG	82572-82655	GT	AGG
(GCT)	 AG	82838-82930	GT	GGG
(GAG)	 AG	83297-83407	GT	GGG
(GAT)	 AG	83555-83584	GA	AGG
-recovered pasa_asmbl_6478.p1, initial, 80317, 80385
-recovered pasa_asmbl_6478.p1, terminal, 83555, 83584
-recovered pasa_asmbl_6478.p1, internal, 67116, 67277
-recovered pasa_asmbl_6478.p1, internal, 67558, 67674
-recovered pasa_asmbl_6478.p1, internal, 67874, 67998
-recovered pasa_asmbl_6478.p1, internal, 68105, 68209
-recovered pasa_asmbl_6478.p1, internal, 68816, 68947
-recovered pasa_asmbl_6478.p1, internal, 69055, 69161
-recovered pasa_asmbl_6478.p1, internal, 69327, 69459
-recovered pasa_asmbl_6478.p1, internal, 70145, 70241
-recovered pasa_asmbl_6478.p1, internal, 70654, 70838
-recovered pasa_asmbl_6478.p1, internal, 70956, 71024
-recovered pasa_asmbl_6478.p1, internal, 71139, 71176
-recovered pasa_asmbl_6478.p1, internal, 71250, 71340
-recovered pasa_asmbl_6478.p1, internal, 71916, 71984
-recovered pasa_asmbl_6478.p1, internal, 72130, 72167
-recovered pasa_asmbl_6478.p1, internal, 72932, 73022
-recovered pasa_asmbl_6478.p1, internal, 73209, 73277
-recovered pasa_asmbl_6478.p1, internal, 73367, 73404
-recovered pasa_asmbl_6478.p1, internal, 74464, 74554
-recovered pasa_asmbl_6478.p1, internal, 74768, 74877
-recovered pasa_asmbl_6478.p1, internal, 74981, 75179
-recovered pasa_asmbl_6478.p1, internal, 75270, 75310
-recovered pasa_asmbl_6478.p1, internal, 75424, 75514
-recovered pasa_asmbl_6478.p1, internal, 76877, 76963
-recovered pasa_asmbl_6478.p1, internal, 79404, 79493
-recovered pasa_asmbl_6478.p1, internal, 79613, 79741
-recovered pasa_asmbl_6478.p1, internal, 79842, 79931
-recovered pasa_asmbl_6478.p1, internal, 80138, 80230
-recovered pasa_asmbl_6478.p1, internal, 80317, 80385
-recovered pasa_asmbl_6478.p1, internal, 80493, 80576
-recovered pasa_asmbl_6478.p1, internal, 82572, 82655
-recovered pasa_asmbl_6478.p1, internal, 82838, 82930
-recovered pasa_asmbl_6478.p1, internal, 83297, 83407
Valid prediction for GeneMark_model.46949_t
Valid prediction for Augustus_model.g18167.t1
Valid prediction for GlimmerHMM_glimmerT_27210-T1
Valid prediction for snap_scaffold_11-snap.624-T1
Valid prediction for snap_scaffold_11-snap.598-T1
Valid prediction for Augustus_model.g18166.t1
Valid prediction for GeneMark_model.46978_t
Valid prediction for snap_scaffold_11-snap.614-T1
Valid prediction for GeneMark_model.46958_t
Valid prediction for GeneMark_model.46967_t
Valid prediction for GlimmerHMM_glimmerT_27206-T1
Valid prediction for HiQ_model.g18164.t1
Valid prediction for GlimmerHMM_glimmerT_27219-T1
Valid prediction for snap_scaffold_11-snap.620-T1
Valid prediction for GlimmerHMM_glimmerT_27218-T1
Valid prediction for GeneMark_model.46973_t
Valid prediction for GeneMark_model.46989_t
Valid prediction for GeneMark_model.46974_t
Valid prediction for snap_scaffold_11-snap.626-T1
Valid prediction for GeneMark_model.46969_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19577, rend_intergenic: 15577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33941, rend_intergenic: 20073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39931, rend_intergenic: 34873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43697, rend_intergenic: 39941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49244, rend_intergenic: 44351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57281, rend_intergenic: 49949  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75912, rend_intergenic: 73042  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83986, rend_intergenic: 76676  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86612, rend_intergenic: 84850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91491, rend_intergenic: 90002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112162, rend_intergenic: 94738  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120540, rend_intergenic: 118253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137160, rend_intergenic: 133995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170631, rend_intergenic: 147841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 177914
-exon list size: 836


building trellis

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50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.6    
52.7    
52.9    
53.0    
53.1    
53.2    
53.3    
53.5    
53.6    
53.7    
53.8    
53.9    
54.1    
54.2    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
56.0    
56.1    
56.2    
56.3    
56.4    
56.6    
56.7    
56.8    
56.9    
57.0    
57.2    
57.3    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.1    
58.2    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.1    
59.2    
59.3    
59.4    
59.5    
59.7    
59.8    
59.9    
60.0    
60.1    
60.3    
60.4    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.2    
61.3    
61.5    
61.6    
61.7    
61.8    
61.9    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.8    
62.9    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.7    
63.8    
64.0    
64.1    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
64.9    
65.0    
65.2    
65.3    
65.4    
65.5    
65.6    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.6    
68.7    
68.9    
69.0    
69.1    
69.2    
69.3    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.2    
70.3    
70.4    
70.5    
70.6    
70.8    
70.9    
71.0    
71.1    
71.2    
71.4    
71.5    
71.6    
71.7    
71.8    
72.0    
72.1    
72.2    
72.3    
72.4    
72.6    
72.7    
72.8    
72.9    
73.0    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
77.0    
77.1    
77.2    
77.3    
77.4    
77.6    
77.7    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.1    
79.2    
79.4    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.7    
80.8    
80.9    
81.0    
81.1    
81.3    
81.4    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.2    
82.3    
82.5    
82.6    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.4    
83.5    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.4    
84.5    
84.6    
84.7    
84.8    
85.0    
85.1    
85.2    
85.3    
85.4    
85.6    
85.7    
85.8    
85.9    
86.0    
86.2    
86.3    
86.4    
86.5    
86.6    
86.8    
86.9    
87.0    
87.1    
87.2    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.1    
88.2    
88.3    
88.4    
88.5    
88.7    
88.8    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
90.9    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.1    
92.2    
92.4    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.3    
93.4    
93.6    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.2    
95.3    
95.5    
95.6    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.7    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
98.9    
99.0    
99.2    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 19577, rend_intergenic: 15577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33941, rend_intergenic: 20073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39931, rend_intergenic: 34873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43697, rend_intergenic: 39941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49244, rend_intergenic: 44351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57281, rend_intergenic: 49949  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75912, rend_intergenic: 73042  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83986, rend_intergenic: 76676  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86612, rend_intergenic: 84850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91491, rend_intergenic: 90002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112162, rend_intergenic: 94738  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120540, rend_intergenic: 118253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137160, rend_intergenic: 133995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170631, rend_intergenic: 147841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support