-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_17303768-17524823 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_11-snap.3597-T1 Valid prediction for GeneMark_model.50457_t Valid prediction for GeneMark_model.50497_t Valid prediction for Augustus_model.g19505.t1 Valid prediction for Augustus_model.g19524.t1 Valid prediction for Augustus_model.g19519.t1 Valid prediction for Augustus_model.g19520.t1 Valid prediction for snap_scaffold_11-snap.3561-T1 Valid prediction for snap_scaffold_11-snap.3570-T1 Valid prediction for GlimmerHMM_glimmerT_29248-T1 Valid prediction for GeneMark_model.50459_t Valid prediction for GeneMark_model.50475_t Valid prediction for GeneMark_model.50450_t Valid prediction for Augustus_model.g19526.t1 Valid prediction for CodingQuarry_transcript_8333-T1 Valid prediction for snap_scaffold_11-snap.3559-T1 Valid prediction for GlimmerHMM_glimmerT_29256-T1 Valid prediction for pasa_asmbl_6202.p1 Valid prediction for CodingQuarry_transcript_8335-T1 Valid prediction for snap_scaffold_11-snap.3589-T1 Valid prediction for GeneMark_model.50491_t Valid prediction for Augustus_model.g19527.t1 Valid prediction for GlimmerHMM_glimmerT_29250-T1 Valid prediction for Augustus_model.g19525.t1 Valid prediction for GeneMark_model.50473_t Valid prediction for GeneMark_model.50493_t Valid prediction for HiQ_model.g19530.t1 Valid prediction for snap_scaffold_11-snap.3596-T1 Valid prediction for GeneMark_model.50487_t Valid prediction for Augustus_model.g19529.t1 Valid prediction for snap_scaffold_11-snap.3576-T1 Valid prediction for GlimmerHMM_glimmerT_29235-T1 Valid prediction for GeneMark_model.50499_t Valid prediction for GeneMark_model.50466_t Valid prediction for GeneMark_model.50504_t Valid prediction for GlimmerHMM_glimmerT_29229-T1 Valid prediction for GeneMark_model.50463_t Valid prediction for GlimmerHMM_glimmerT_29231-T1 Valid prediction for GeneMark_model.50489_t Couldn't classify 31163, 31405 Sorry, prediction pasa_asmbl_6194.p1 fails validation. (GTG) AC 31163-31405 GT AGG (GAC) AG 31552-31705 GT AGG (GCA) AG 31795-31937 GT AGG (AAC) AG 32108-32276 GT AGG (GTC) AG 32444-32568 GT TGG (GTG) AG 32710-32838 AC AGA -recovered pasa_asmbl_6194.p1, terminal, 32710, 32838 -recovered pasa_asmbl_6194.p1, internal, 31552, 31705 -recovered pasa_asmbl_6194.p1, internal, 31795, 31937 -recovered pasa_asmbl_6194.p1, internal, 32108, 32276 -recovered pasa_asmbl_6194.p1, internal, 32444, 32568 Valid prediction for snap_scaffold_11-snap.3556-T1 Couldn't classify 5720, 5742 Couldn't classify 7221, 7400 Sorry, prediction pasa_asmbl_6188.p1 fails validation. (CGT) TC 5720-5742 GT AGG (GGA) AG 5849-6104 GT AGG (GTG) AG 6474-6660 GT CGG (GTT) AG 6797-7068 GT AGG (GTG) AG 7221-7400 CA GGC -recovered pasa_asmbl_6188.p1, internal, 5849, 6104 -recovered pasa_asmbl_6188.p1, internal, 6474, 6660 -recovered pasa_asmbl_6188.p1, internal, 6797, 7068 Valid prediction for GeneMark_model.50453_t Valid prediction for snap_scaffold_11-snap.3579-T1 Valid prediction for GlimmerHMM_glimmerT_29251-T1 Valid prediction for HiQ_model.g19511.t1 Valid prediction for snap_scaffold_11-snap.3593-T1 Valid prediction for GeneMark_model.50484_t Valid prediction for GeneMark_model.50479_t Valid prediction for GeneMark_model.50471_t Valid prediction for snap_scaffold_11-snap.3557-T1 Valid prediction for snap_scaffold_11-snap.3581-T1 Valid prediction for HiQ_model.g19507.t1 Valid prediction for snap_scaffold_11-snap.3598-T1 Valid prediction for CodingQuarry_transcript_8338-T1 Valid prediction for GlimmerHMM_glimmerT_29242-T1 Valid prediction for snap_scaffold_11-snap.3571-T1 Valid prediction for GeneMark_model.50501_t Valid prediction for GeneMark_model.50495_t Valid prediction for GlimmerHMM_glimmerT_29254-T1 Valid prediction for GlimmerHMM_glimmerT_29233-T1 Valid prediction for Augustus_model.g19513.t1 Valid prediction for snap_scaffold_11-snap.3572-T1 Valid prediction for GeneMark_model.50451_t Valid prediction for GeneMark_model.50469_t Valid prediction for GeneMark_model.50482_t Valid prediction for GeneMark_model.50464_t Valid prediction for snap_scaffold_11-snap.3553-T1 Valid prediction for GlimmerHMM_glimmerT_29243-T1 Valid prediction for snap_scaffold_11-snap.3587-T1 Valid prediction for Augustus_model.g19532.t1 Valid prediction for GeneMark_model.50467_t Valid prediction for snap_scaffold_11-snap.3594-T1 Valid prediction for GeneMark_model.50461_t Valid prediction for snap_scaffold_11-snap.3565-T1 Valid prediction for Augustus_model.g19517.t1 Valid prediction for HiQ_model.g19509.t1 Couldn't classify 9903, 9941 Couldn't classify 29434, 29652 Sorry, prediction pasa_asmbl_6191.p1 fails validation. (GTC) CT 9903-9941 GT AGG (GTG) AG 10136-10312 GT AGG (GTC) AG 10424-10534 GT AGG (TCC) AG 10699-10818 GT ACG (CTG) AG 10949-11188 GT CTG (GGG) AG 11298-11453 GT AGG (GTG) AG 11817-11930 GT AGG (CTG) AG 12059-12169 GT AGG (ATC) AG 12319-12528 GT AGG (ATC) AG 12630-12776 GT AGG (GTG) AG 12896-13062 GT AGG (CAT) AG 13241-13414 GT AGG (GTT) AG 13522-13873 GT AGG (GCT) AG 14030-14224 GT TGG (ATC) AG 14320-14602 GT CGG (GTC) AG 14703-14803 GT AGG (GCG) AG 14983-15142 GT CAG (GTG) AG 15281-15521 GT AAG (GCT) AG 15800-15983 GT AGG (ATC) AG 16153-16365 GT AGG (GTG) AG 16718-16956 GT AAG (GAT) AG 17192-17348 GT ATG (GTG) AG 17704-17931 GT AGG (ATC) AG 18230-18460 GT AGG (AGG) AG 18596-18736 GT AGG (GTG) AG 18917-19150 GT AGG (GTG) AG 19248-19454 GT AGG (ATG) AG 19703-19824 GT AGG (GTT) AG 19916-20081 GT AGG (GAG) AG 20174-20337 GT AGG (ACT) AG 20451-20580 GT AGG (GAC) AG 20694-20827 GT AGG (GAT) AG 21033-21147 GT AGG (GTC) AG 21287-21448 GT AGG (GTG) AG 21662-21876 GT AGG (GTG) AG 21961-22165 GT AGG (GCT) AG 22352-22525 GT AGG (GTG) AG 22638-22757 GT AGG (GTG) AG 22865-22985 GT CGG (CTG) AG 23355-23550 GT AGG (CGA) AG 24267-24384 GT AGG (CTG) AG 24634-24849 GT AGG (GTG) AG 25008-25220 GT AGG (TTC) AG 25333-25460 GT AGG (GTA) AG 25633-25786 GT AGG (GAT) AG 25902-26048 GT CGG (GTG) AG 26192-26342 GT GGG (GTG) AG 26501-26754 GT AGG (ATG) AG 26884-27018 GT AGG (GTG) AG 27105-27199 GT AAG (CGA) AG 27318-27492 GT AGG (CAA) AG 27583-27658 GT CAG (CTA) AG 27783-27943 GT AGG (GTG) AG 28065-28176 GT CGG (GTT) AG 28261-28321 GT AGG (GTG) AG 28438-28561 GT AGG (GTA) AG 28690-28803 GT AGG (GCT) AG 28961-29131 GT AGG (GGC) AG 29434-29652 TC GGT -recovered pasa_asmbl_6191.p1, initial, 19703, 19824 -recovered pasa_asmbl_6191.p1, initial, 26884, 27018 -recovered pasa_asmbl_6191.p1, internal, 10136, 10312 -recovered pasa_asmbl_6191.p1, internal, 10424, 10534 -recovered pasa_asmbl_6191.p1, internal, 10699, 10818 -recovered pasa_asmbl_6191.p1, internal, 10949, 11188 -recovered pasa_asmbl_6191.p1, internal, 11298, 11453 -recovered pasa_asmbl_6191.p1, internal, 11817, 11930 -recovered pasa_asmbl_6191.p1, internal, 12059, 12169 -recovered pasa_asmbl_6191.p1, internal, 12319, 12528 -recovered pasa_asmbl_6191.p1, internal, 12630, 12776 -recovered pasa_asmbl_6191.p1, internal, 12896, 13062 -recovered pasa_asmbl_6191.p1, internal, 13241, 13414 -recovered pasa_asmbl_6191.p1, internal, 13522, 13873 -recovered pasa_asmbl_6191.p1, internal, 14030, 14224 -recovered pasa_asmbl_6191.p1, internal, 14320, 14602 -recovered pasa_asmbl_6191.p1, internal, 14703, 14803 -recovered pasa_asmbl_6191.p1, internal, 14983, 15142 -recovered pasa_asmbl_6191.p1, internal, 15281, 15521 -recovered pasa_asmbl_6191.p1, internal, 15800, 15983 -recovered pasa_asmbl_6191.p1, internal, 16153, 16365 -recovered pasa_asmbl_6191.p1, internal, 16718, 16956 -recovered pasa_asmbl_6191.p1, internal, 17192, 17348 -recovered pasa_asmbl_6191.p1, internal, 17704, 17931 -recovered pasa_asmbl_6191.p1, internal, 18230, 18460 -recovered pasa_asmbl_6191.p1, internal, 18596, 18736 -recovered pasa_asmbl_6191.p1, internal, 18917, 19150 -recovered pasa_asmbl_6191.p1, internal, 19248, 19454 -recovered pasa_asmbl_6191.p1, internal, 19703, 19824 -recovered pasa_asmbl_6191.p1, internal, 19916, 20081 -recovered pasa_asmbl_6191.p1, internal, 20174, 20337 -recovered pasa_asmbl_6191.p1, internal, 20451, 20580 -recovered pasa_asmbl_6191.p1, internal, 20694, 20827 -recovered pasa_asmbl_6191.p1, internal, 21033, 21147 -recovered pasa_asmbl_6191.p1, internal, 21287, 21448 -recovered pasa_asmbl_6191.p1, internal, 21662, 21876 -recovered pasa_asmbl_6191.p1, internal, 21961, 22165 -recovered pasa_asmbl_6191.p1, internal, 22352, 22525 -recovered pasa_asmbl_6191.p1, internal, 22638, 22757 -recovered pasa_asmbl_6191.p1, internal, 22865, 22985 -recovered pasa_asmbl_6191.p1, internal, 23355, 23550 -recovered pasa_asmbl_6191.p1, internal, 24267, 24384 -recovered pasa_asmbl_6191.p1, internal, 24634, 24849 -recovered pasa_asmbl_6191.p1, internal, 25008, 25220 -recovered pasa_asmbl_6191.p1, internal, 25333, 25460 -recovered pasa_asmbl_6191.p1, internal, 25633, 25786 -recovered pasa_asmbl_6191.p1, internal, 25902, 26048 -recovered pasa_asmbl_6191.p1, internal, 26192, 26342 -recovered pasa_asmbl_6191.p1, internal, 26501, 26754 -recovered pasa_asmbl_6191.p1, internal, 26884, 27018 -recovered pasa_asmbl_6191.p1, internal, 27105, 27199 -recovered pasa_asmbl_6191.p1, internal, 27318, 27492 -recovered pasa_asmbl_6191.p1, internal, 27583, 27658 -recovered pasa_asmbl_6191.p1, internal, 27783, 27943 -recovered pasa_asmbl_6191.p1, internal, 28065, 28176 -recovered pasa_asmbl_6191.p1, internal, 28261, 28321 -recovered pasa_asmbl_6191.p1, internal, 28438, 28561 -recovered pasa_asmbl_6191.p1, internal, 28690, 28803 -recovered pasa_asmbl_6191.p1, internal, 28961, 29131 Couldn't classify 8527, 8727 Couldn't classify 9241, 9363 Sorry, prediction pasa_asmbl_6190.p1 fails validation. (TCT) TC 8527-8727 GT AGG (GTG) AG 8907-9086 GT AGG (ATC) AG 9241-9363 AA ACA -recovered pasa_asmbl_6190.p1, internal, 8907, 9086 Valid prediction for snap_scaffold_11-snap.3551-T1 Valid prediction for snap_scaffold_11-snap.3564-T1 Valid prediction for HiQ_model.g19516.t1 Couldn't classify 35604, 35864 Sorry, prediction pasa_asmbl_6196.p1 fails validation. (TTA) TG 35604-35864 GT AGG (GCG) AG 37036-37218 GT AGG (AGA) AG 37457-38791 GT TGG (GGG) AG 40027-40080 CC AGC -recovered pasa_asmbl_6196.p1, terminal, 40027, 40080 -recovered pasa_asmbl_6196.p1, internal, 37036, 37218 -recovered pasa_asmbl_6196.p1, internal, 37457, 38791 Valid prediction for snap_scaffold_11-snap.3590-T1 Valid prediction for GeneMark_model.50477_t Valid prediction for snap_scaffold_11-snap.3582-T1 Couldn't classify 4199, 4537 Sorry, prediction pasa_asmbl_6187.p1 fails validation. (TCA) CA 4199-4537 GG AAG Valid prediction for pasa_asmbl_6208.p1 Couldn't classify 7870, 8355 Sorry, prediction pasa_asmbl_6189.p1 fails validation. (GAA) TG 7870-8355 AG GCA Valid prediction for snap_scaffold_11-snap.3577-T1 Valid prediction for GlimmerHMM_glimmerT_29247-T1 Valid prediction for GlimmerHMM_glimmerT_29240-T1 Couldn't classify 28907, 29131 Couldn't classify 29434, 29652 Sorry, prediction pasa_asmbl_6192.p1 fails validation. (TTT) TT 28907-29131 GT AGG (GGC) AG 29434-29652 TC GGT Couldn't classify 47250, 47264 Sorry, prediction pasa_asmbl_6199.p1 fails validation. (GGC) CC 47250-47264 GT AGG (TGT) AG 47347-47472 GT GGG (GGT) AG 47625-47773 GT AGG (ACT) AG 47919-47986 GT CCG (CAT) AG 48256-48345 GT AGG (ATG) AG 48569-48642 GT AGG (GGC) AG 48743-48813 GT ACG (TTA) AG 49006-49081 GT AGG (GCG) AG 49172-49312 GT AGG (GAG) AG 49491-49699 GT AGG (AAA) AG 49813-49989 GT AAG (GTA) AG 50305-50368 GT AGG (GCC) AG 50481-50569 GT TGG (GTT) AG 50709-50812 GT AGG (GTG) AG 50894-50956 GT AGG (GTG) AG 51111-51223 GT AGG (GTC) AG 51361-51418 GT AGG (GGA) AG 51681-51739 GT AGG (GTG) AG 51869-51989 GT GGG (GAG) AG 52220-52581 GT AGG (GCT) AG 52704-52753 GT AGG (AGA) AG 52839-52977 GT AGG (AAC) AG 53179-53256 GT GGG (TCT) AG 53364-53546 GT AGG (GAG) AG 53641-53679 GT AGG (ACA) AG 53989-54015 GT CAG (GAA) AG 56913-57019 GT AAG (ACA) AG 57109-57232 GT AGG (GAT) AG 57513-57590 GA AAG -recovered pasa_asmbl_6199.p1, initial, 48569, 48642 add_exon() Sorry, pasa_asmbl_6199.p1 56913-57019-terminal-2 is invalid. -recovered pasa_asmbl_6199.p1, terminal, 56913, 57019 -recovered pasa_asmbl_6199.p1, terminal, 57513, 57590 -recovered pasa_asmbl_6199.p1, internal, 47347, 47472 -recovered pasa_asmbl_6199.p1, internal, 47625, 47773 -recovered pasa_asmbl_6199.p1, internal, 47919, 47986 -recovered pasa_asmbl_6199.p1, internal, 48256, 48345 -recovered pasa_asmbl_6199.p1, internal, 48569, 48642 -recovered pasa_asmbl_6199.p1, internal, 48743, 48813 -recovered pasa_asmbl_6199.p1, internal, 49006, 49081 -recovered pasa_asmbl_6199.p1, internal, 49172, 49312 -recovered pasa_asmbl_6199.p1, internal, 49491, 49699 -recovered pasa_asmbl_6199.p1, internal, 49813, 49989 -recovered pasa_asmbl_6199.p1, internal, 50305, 50368 -recovered pasa_asmbl_6199.p1, internal, 50481, 50569 -recovered pasa_asmbl_6199.p1, internal, 50709, 50812 -recovered pasa_asmbl_6199.p1, internal, 50894, 50956 -recovered pasa_asmbl_6199.p1, internal, 51111, 51223 -recovered pasa_asmbl_6199.p1, internal, 51361, 51418 -recovered pasa_asmbl_6199.p1, internal, 51681, 51739 -recovered pasa_asmbl_6199.p1, internal, 51869, 51989 -recovered pasa_asmbl_6199.p1, internal, 52220, 52581 -recovered pasa_asmbl_6199.p1, internal, 52704, 52753 -recovered pasa_asmbl_6199.p1, internal, 52839, 52977 -recovered pasa_asmbl_6199.p1, internal, 53179, 53256 -recovered pasa_asmbl_6199.p1, internal, 53364, 53546 -recovered pasa_asmbl_6199.p1, internal, 53641, 53679 -recovered pasa_asmbl_6199.p1, internal, 53989, 54015 -recovered pasa_asmbl_6199.p1, internal, 56913, 57019 -recovered pasa_asmbl_6199.p1, internal, 57109, 57232 Valid prediction for Augustus_model.g19522.t1 Valid prediction for Augustus_model.g19523.t1 Valid prediction for pasa_asmbl_6201.p1 Valid prediction for snap_scaffold_11-snap.3573-T1 Valid prediction for GlimmerHMM_glimmerT_29228-T1 Valid prediction for GeneMark_model.50476_t Valid prediction for GeneMark_model.50455_t Valid prediction for GlimmerHMM_glimmerT_29239-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g19521.t1 Valid prediction for CodingQuarry_transcript_8334-T1 Valid prediction for Augustus_model.g19506.t1 Valid prediction for HiQ_model.g19514.t1 Valid prediction for GlimmerHMM_glimmerT_29255-T1 Valid prediction for GeneMark_model.50488_t Valid prediction for GeneMark_model.50486_t Valid prediction for snap_scaffold_11-snap.3560-T1 Valid prediction for GeneMark_model.50494_t Valid prediction for snap_scaffold_11-snap.3558-T1 Valid prediction for GlimmerHMM_glimmerT_29253-T1 Valid prediction for snap_scaffold_11-snap.3567-T1 Valid prediction for snap_scaffold_11-snap.3566-T1 Valid prediction for pasa_asmbl_7250.p1 Valid prediction for GlimmerHMM_glimmerT_29257-T1 Valid prediction for snap_scaffold_11-snap.3575-T1 Valid prediction for CodingQuarry_transcript_8339-T1 Valid prediction for Augustus_model.g19515.t1 Valid prediction for GeneMark_model.50492_t Valid prediction for GeneMark_model.50462_t Valid prediction for CodingQuarry_transcript_8337-T1 Valid prediction for GlimmerHMM_glimmerT_29230-T1 Valid prediction for GeneMark_model.50480_t Valid prediction for GeneMark_model.50460_t Valid prediction for Augustus_model.g19504.t1 Valid prediction for GeneMark_model.50490_t Valid prediction for snap_scaffold_11-snap.3580-T1 Valid prediction for snap_scaffold_11-snap.3555-T1 Couldn't classify 159389, 159602 Sorry, prediction pasa_asmbl_7243.p1 fails validation. (ATG) TC 158854-159120 GT AGG (AAT) AG 159214-159293 GT TGG (GAA) AG 159389-159602 AG GGA -recovered pasa_asmbl_7243.p1, initial, 158854, 159120 -recovered pasa_asmbl_7243.p1, internal, 159214, 159293 Valid prediction for snap_scaffold_11-snap.3588-T1 Valid prediction for snap_scaffold_11-snap.3550-T1 Valid prediction for GlimmerHMM_glimmerT_29244-T1 Valid prediction for snap_scaffold_11-snap.3569-T1 Valid prediction for snap_scaffold_11-snap.3585-T1 Valid prediction for Augustus_model.g19510.t1 Valid prediction for snap_scaffold_11-snap.3562-T1 Valid prediction for GeneMark_model.50458_t Valid prediction for snap_scaffold_11-snap.3591-T1 Valid prediction for snap_scaffold_11-snap.3584-T1 Valid prediction for GeneMark_model.50502_t Valid prediction for Augustus_model.g19528.t1 Valid prediction for GeneMark_model.50472_t Valid prediction for snap_scaffold_11-snap.3563-T1 Valid prediction for GlimmerHMM_glimmerT_29249-T1 Valid prediction for GeneMark_model.50500_t Valid prediction for GlimmerHMM_glimmerT_29237-T1 Valid prediction for snap_scaffold_11-snap.3574-T1 Valid prediction for GeneMark_model.50498_t Valid prediction for GlimmerHMM_glimmerT_29238-T1 Valid prediction for GlimmerHMM_glimmerT_29241-T1 Valid prediction for GeneMark_model.50478_t Valid prediction for pasa_asmbl_7242.p1 Valid prediction for snap_scaffold_11-snap.3595-T1 Valid prediction for GlimmerHMM_glimmerT_29245-T1 Valid prediction for GlimmerHMM_glimmerT_29234-T1 Valid prediction for GeneMark_model.50465_t Valid prediction for snap_scaffold_11-snap.3592-T1 Valid prediction for GeneMark_model.50456_t Valid prediction for pasa_asmbl_7244.p1 Couldn't classify 49585, 49744 Sorry, prediction pasa_asmbl_7248.p1 fails validation. (TAT) AC 49585-49744 GT CGG (ATG) AG 49966-50185 GT CGG (ATA) AG 50516-50747 AG GAA add_exon() Sorry, pasa_asmbl_7248.p1 49966-50185-initial-1 is invalid. -recovered pasa_asmbl_7248.p1, initial, 49966, 50185 -recovered pasa_asmbl_7248.p1, terminal, 50516, 50747 -recovered pasa_asmbl_7248.p1, internal, 49966, 50185 Valid prediction for Augustus_model.g19512.t1 Valid prediction for GeneMark_model.50496_t Valid prediction for snap_scaffold_11-snap.3552-T1 Valid prediction for snap_scaffold_11-snap.3599-T1 Valid prediction for GeneMark_model.50483_t Valid prediction for GeneMark_model.50452_t Valid prediction for GeneMark_model.50449_t Valid prediction for GeneMark_model.50454_t Valid prediction for GeneMark_model.50474_t Valid prediction for CodingQuarry_transcript_8336-T1 Valid prediction for snap_scaffold_11-snap.3583-T1 Valid prediction for Augustus_model.g19508.t1 Valid prediction for GlimmerHMM_glimmerT_29236-T1 Valid prediction for snap_scaffold_11-snap.3554-T1 Valid prediction for GeneMark_model.50468_t Valid prediction for HiQ_model.g19531.t1 Valid prediction for GeneMark_model.50470_t Valid prediction for GlimmerHMM_glimmerT_29246-T1 Valid prediction for snap_scaffold_11-snap.3586-T1 Valid prediction for GlimmerHMM_glimmerT_29232-T1 Valid prediction for Augustus_model.g19533.t1 Valid prediction for snap_scaffold_11-snap.3568-T1 Valid prediction for HiQ_model.g19518.t1 Valid prediction for GlimmerHMM_glimmerT_29252-T1 Valid prediction for GeneMark_model.50503_t Valid prediction for GeneMark_model.50485_t Valid prediction for GeneMark_model.50481_t Valid prediction for snap_scaffold_11-snap.3578-T1 Couldn't classify 18143, 18201 Sorry, prediction pasa_asmbl_7251.p1 fails validation. (GGT) CA 18143-18201 GT AGG (ACA) AG 18641-18705 GT AGG (TCG) AG 19723-20601 GT CAG (GTC) AG 20840-21117 GT GGG (GAT) AG 21470-21588 GT AGG (ACG) AG 21735-21762 GT AGG (GAG) AG 21903-21939 GT AGG (ATG) AG 22074-22134 GT AGG (GGT) AG 22736-22793 GT AGG (GAA) AG 22915-22972 GT TGG (CCA) AG 23455-23492 TC AAT add_exon() Sorry, pasa_asmbl_7251.p1 22074-22134-initial-1 is invalid. -recovered pasa_asmbl_7251.p1, initial, 22074, 22134 -recovered pasa_asmbl_7251.p1, terminal, 23455, 23492 -recovered pasa_asmbl_7251.p1, internal, 18641, 18705 -recovered pasa_asmbl_7251.p1, internal, 19723, 20601 -recovered pasa_asmbl_7251.p1, internal, 20840, 21117 -recovered pasa_asmbl_7251.p1, internal, 21470, 21588 -recovered pasa_asmbl_7251.p1, internal, 21735, 21762 -recovered pasa_asmbl_7251.p1, internal, 21903, 21939 -recovered pasa_asmbl_7251.p1, internal, 22074, 22134 -recovered pasa_asmbl_7251.p1, internal, 22736, 22793 -recovered pasa_asmbl_7251.p1, internal, 22915, 22972 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23895, rend_intergenic: 21013 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32838, rend_intergenic: 24954 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55673, rend_intergenic: 49449 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97186, rend_intergenic: 92897 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113493, rend_intergenic: 106904 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126021, rend_intergenic: 117776 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127759, rend_intergenic: 126395 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128307, rend_intergenic: 127886 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135433, rend_intergenic: 131320 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163347, rend_intergenic: 139759 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168588, rend_intergenic: 163758 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 201240, rend_intergenic: 197358 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209033, rend_intergenic: 201352 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 221056 -exon list size: 951 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 39 predictions from path traversal Error with prediction: snap lend_intergenic: 23895, rend_intergenic: 21013 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32838, rend_intergenic: 24954 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55673, rend_intergenic: 49449 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97186, rend_intergenic: 92897 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113493, rend_intergenic: 106904 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126021, rend_intergenic: 117776 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127759, rend_intergenic: 126395 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128307, rend_intergenic: 127886 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135433, rend_intergenic: 131320 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163347, rend_intergenic: 139759 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168588, rend_intergenic: 163758 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 201240, rend_intergenic: 197358 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209033, rend_intergenic: 201352 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 28 predictions persist after filtering for low support