-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_16768660-16863707

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.50294_t
Valid prediction for snap_scaffold_11-snap.3446-T1
Valid prediction for snap_scaffold_11-snap.3437-T1
Valid prediction for snap_scaffold_11-snap.3450-T1
Valid prediction for GeneMark_model.50308_t
Valid prediction for Augustus_model.g19459.t1
Valid prediction for GlimmerHMM_glimmerT_29151-T1
Valid prediction for snap_scaffold_11-snap.3438-T1
Valid prediction for GlimmerHMM_glimmerT_29138-T1
Valid prediction for GlimmerHMM_glimmerT_29146-T1
Valid prediction for GeneMark_model.50292_t
Valid prediction for GlimmerHMM_glimmerT_29153-T1
Valid prediction for Augustus_model.g19453.t1
Valid prediction for GeneMark_model.50306_t
Valid prediction for GlimmerHMM_glimmerT_29142-T1
Valid prediction for GeneMark_model.50322_t
Valid prediction for Augustus_model.g19461.t1
Valid prediction for GeneMark_model.50296_t
Valid prediction for snap_scaffold_11-snap.3445-T1
Valid prediction for GeneMark_model.50300_t
Valid prediction for Augustus_model.g19454.t1
Valid prediction for snap_scaffold_11-snap.3440-T1
Valid prediction for snap_scaffold_11-snap.3449-T1
Valid prediction for GeneMark_model.50325_t
Valid prediction for snap_scaffold_11-snap.3433-T1
Valid prediction for GlimmerHMM_glimmerT_29144-T1
Valid prediction for Augustus_model.g19455.t1
Valid prediction for GlimmerHMM_glimmerT_29149-T1
Valid prediction for snap_scaffold_11-snap.3439-T1
Valid prediction for snap_scaffold_11-snap.3442-T1
Valid prediction for GeneMark_model.50316_t
Valid prediction for GlimmerHMM_glimmerT_29139-T1
Valid prediction for GeneMark_model.50310_t
Valid prediction for GeneMark_model.50305_t
Valid prediction for GeneMark_model.50318_t
Valid prediction for GlimmerHMM_glimmerT_29143-T1
Valid prediction for snap_scaffold_11-snap.3436-T1
Valid prediction for GeneMark_model.50298_t
Valid prediction for GeneMark_model.50291_t
Valid prediction for snap_scaffold_11-snap.3447-T1
Valid prediction for GlimmerHMM_glimmerT_29140-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.3452-T1
Valid prediction for GlimmerHMM_glimmerT_29150-T1
Valid prediction for snap_scaffold_11-snap.3451-T1
Valid prediction for Augustus_model.g19458.t1
Valid prediction for GlimmerHMM_glimmerT_29148-T1
Valid prediction for Augustus_model.g19460.t1
Valid prediction for GeneMark_model.50317_t
Valid prediction for GlimmerHMM_glimmerT_29152-T1
Valid prediction for GeneMark_model.50307_t
Valid prediction for GeneMark_model.50309_t
Valid prediction for snap_scaffold_11-snap.3453-T1
Valid prediction for GeneMark_model.50314_t
Valid prediction for Augustus_model.g19452.t1
Valid prediction for snap_scaffold_11-snap.3435-T1
Valid prediction for GeneMark_model.50315_t
Valid prediction for GeneMark_model.50313_t
Valid prediction for Augustus_model.g19462.t1
Valid prediction for snap_scaffold_11-snap.3434-T1
Valid prediction for GlimmerHMM_glimmerT_29137-T1
Valid prediction for GlimmerHMM_glimmerT_29147-T1
Valid prediction for snap_scaffold_11-snap.3444-T1
Valid prediction for snap_scaffold_11-snap.3443-T1
Valid prediction for GeneMark_model.50324_t
Valid prediction for snap_scaffold_11-snap.3448-T1
Valid prediction for GlimmerHMM_glimmerT_29141-T1
Valid prediction for GeneMark_model.50299_t
Valid prediction for GeneMark_model.50297_t
Valid prediction for Augustus_model.g19456.t1
Valid prediction for GeneMark_model.50323_t
Valid prediction for GeneMark_model.50290_t
Valid prediction for GeneMark_model.50312_t
Valid prediction for snap_scaffold_11-snap.3454-T1
Valid prediction for GeneMark_model.50319_t
Valid prediction for GlimmerHMM_glimmerT_29145-T1
Valid prediction for snap_scaffold_11-snap.3441-T1
Valid prediction for GeneMark_model.50293_t
Valid prediction for snap_scaffold_11-snap.3432-T1
Couldn't classify 90052, 90702
Sorry, prediction pasa_asmbl_7218.p1 fails validation.
(CGC)	 CC	90052-90702	GA	AGG
Valid prediction for Augustus_model.g19457.t1
Valid prediction for GeneMark_model.50304_t
Valid prediction for GeneMark_model.50321_t
Valid prediction for GeneMark_model.50295_t
Valid prediction for GeneMark_model.50320_t
Valid prediction for GeneMark_model.50302_t
Valid prediction for GeneMark_model.50301_t
Valid prediction for snap_scaffold_11-snap.3431-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15586, rend_intergenic: 11401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19274, rend_intergenic: 16123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28969, rend_intergenic: 21199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62248, rend_intergenic: 44382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76246, rend_intergenic: 67422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 95048
-exon list size: 343


building trellis

0.3    
0.6    
0.9    
1.2    
1.4    
1.7    
2.0    
2.3    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.3    
4.6    
4.9    
5.2    
5.5    
5.8    
6.1    
6.4    
6.7    
7.0    
7.2    
7.5    
7.8    
8.1    
8.4    
8.7    
9.0    
9.3    
9.6    
9.9    
10.1    
10.4    
10.7    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.8    
13.0    
13.3    
13.6    
13.9    
14.2    
14.5    
14.8    
15.1    
15.4    
15.7    
15.9    
16.2    
16.5    
16.8    
17.1    
17.4    
17.7    
18.0    
18.3    
18.6    
18.8    
19.1    
19.4    
19.7    
20.0    
20.3    
20.6    
20.9    
21.2    
21.4    
21.7    
22.0    
22.3    
22.6    
22.9    
23.2    
23.5    
23.8    
24.1    
24.3    
24.6    
24.9    
25.2    
25.5    
25.8    
26.1    
26.4    
26.7    
27.0    
27.2    
27.5    
27.8    
28.1    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.1    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.2    
32.5    
32.8    
33.0    
33.3    
33.6    
33.9    
34.2    
34.5    
34.8    
35.1    
35.4    
35.7    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.7    
38.0    
38.3    
38.6    
38.8    
39.1    
39.4    
39.7    
40.0    
40.3    
40.6    
40.9    
41.2    
41.4    
41.7    
42.0    
42.3    
42.6    
42.9    
43.2    
43.5    
43.8    
44.1    
44.3    
44.6    
44.9    
45.2    
45.5    
45.8    
46.1    
46.4    
46.7    
47.0    
47.2    
47.5    
47.8    
48.1    
48.4    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.6    
51.9    
52.2    
52.5    
52.8    
53.0    
53.3    
53.6    
53.9    
54.2    
54.5    
54.8    
55.1    
55.4    
55.7    
55.9    
56.2    
56.5    
56.8    
57.1    
57.4    
57.7    
58.0    
58.3    
58.6    
58.8    
59.1    
59.4    
59.7    
60.0    
60.3    
60.6    
60.9    
61.2    
61.4    
61.7    
62.0    
62.3    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.3    
64.6    
64.9    
65.2    
65.5    
65.8    
66.1    
66.4    
66.7    
67.0    
67.2    
67.5    
67.8    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
69.9    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
71.9    
72.2    
72.5    
72.8    
73.0    
73.3    
73.6    
73.9    
74.2    
74.5    
74.8    
75.1    
75.4    
75.7    
75.9    
76.2    
76.5    
76.8    
77.1    
77.4    
77.7    
78.0    
78.3    
78.6    
78.8    
79.1    
79.4    
79.7    
80.0    
80.3    
80.6    
80.9    
81.2    
81.4    
81.7    
82.0    
82.3    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.3    
84.6    
84.9    
85.2    
85.5    
85.8    
86.1    
86.4    
86.7    
87.0    
87.2    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.3    
89.6    
89.9    
90.1    
90.4    
90.7    
91.0    
91.3    
91.6    
91.9    
92.2    
92.5    
92.8    
93.0    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.1    
95.4    
95.7    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.7    
98.0    
98.3    
98.6    
98.8    
99.1    
99.4    
99.7    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 15586, rend_intergenic: 11401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19274, rend_intergenic: 16123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28969, rend_intergenic: 21199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62248, rend_intergenic: 44382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76246, rend_intergenic: 67422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support