-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_16169549-16335747

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_11-snap.3334-T1
Valid prediction for GeneMark_model.50205_t
Valid prediction for GeneMark_model.50204_t
Valid prediction for snap_scaffold_11-snap.3322-T1
Valid prediction for GlimmerHMM_glimmerT_29071-T1
Valid prediction for GlimmerHMM_glimmerT_29078-T1
Valid prediction for GeneMark_model.50186_t
Valid prediction for snap_scaffold_11-snap.3325-T1
Valid prediction for GeneMark_model.50188_t
Valid prediction for Augustus_model.g19412.t1
Valid prediction for GeneMark_model.50193_t
Valid prediction for snap_scaffold_11-snap.3318-T1
Valid prediction for GeneMark_model.50202_t
Valid prediction for GeneMark_model.50174_t
Valid prediction for snap_scaffold_11-snap.3319-T1
Valid prediction for GeneMark_model.50179_t
Valid prediction for GeneMark_model.50200_t
Valid prediction for GeneMark_model.50172_t
Valid prediction for GlimmerHMM_glimmerT_29074-T1
Valid prediction for snap_scaffold_11-snap.3329-T1
Valid prediction for snap_scaffold_11-snap.3343-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.50175_t
Valid prediction for snap_scaffold_11-snap.3331-T1
Valid prediction for Augustus_model.g19415.t1
Valid prediction for GeneMark_model.50170_t
Valid prediction for GlimmerHMM_glimmerT_29077-T1
Valid prediction for snap_scaffold_11-snap.3347-T1
Valid prediction for snap_scaffold_11-snap.3342-T1
Valid prediction for GlimmerHMM_glimmerT_29072-T1
Valid prediction for GeneMark_model.50197_t
Valid prediction for GeneMark_model.50198_t
Valid prediction for snap_scaffold_11-snap.3344-T1
Valid prediction for GlimmerHMM_glimmerT_29068-T1
Valid prediction for snap_scaffold_11-snap.3337-T1
Valid prediction for GeneMark_model.50183_t
Valid prediction for GeneMark_model.50191_t
Valid prediction for GeneMark_model.50168_t
Valid prediction for GlimmerHMM_glimmerT_29080-T1
Valid prediction for GeneMark_model.50195_t
Valid prediction for snap_scaffold_11-snap.3339-T1
Valid prediction for Augustus_model.g19410.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.3327-T1
Valid prediction for GeneMark_model.50203_t
Valid prediction for Augustus_model.g19409.t1
Valid prediction for snap_scaffold_11-snap.3321-T1
Valid prediction for snap_scaffold_11-snap.3338-T1
Valid prediction for snap_scaffold_11-snap.3316-T1
Valid prediction for snap_scaffold_11-snap.3324-T1
Valid prediction for Augustus_model.g19413.t1
Valid prediction for GlimmerHMM_glimmerT_29075-T1
Valid prediction for GeneMark_model.50178_t
Valid prediction for snap_scaffold_11-snap.3328-T1
Valid prediction for snap_scaffold_11-snap.3323-T1
Valid prediction for snap_scaffold_11-snap.3340-T1
Valid prediction for GeneMark_model.50182_t
Valid prediction for GeneMark_model.50181_t
Valid prediction for snap_scaffold_11-snap.3346-T1
Valid prediction for GeneMark_model.50199_t
Valid prediction for GeneMark_model.50167_t
Valid prediction for snap_scaffold_11-snap.3336-T1
Valid prediction for GlimmerHMM_glimmerT_29067-T1
Valid prediction for GlimmerHMM_glimmerT_29066-T1
Valid prediction for GeneMark_model.50184_t
Valid prediction for snap_scaffold_11-snap.3341-T1
Valid prediction for GeneMark_model.50190_t
Valid prediction for Augustus_model.g19411.t1
Valid prediction for GeneMark_model.50169_t
Valid prediction for GeneMark_model.50171_t
Valid prediction for snap_scaffold_11-snap.3326-T1
Valid prediction for GeneMark_model.50201_t
Valid prediction for snap_scaffold_11-snap.3330-T1
Valid prediction for snap_scaffold_11-snap.3335-T1
Valid prediction for GeneMark_model.50194_t
Valid prediction for snap_scaffold_11-snap.3332-T1
Valid prediction for snap_scaffold_11-snap.3345-T1
Valid prediction for GeneMark_model.50180_t
Valid prediction for snap_scaffold_11-snap.3320-T1
Valid prediction for GeneMark_model.50187_t
Valid prediction for GlimmerHMM_glimmerT_29069-T1
Valid prediction for snap_scaffold_11-snap.3317-T1
Valid prediction for GeneMark_model.50192_t
Valid prediction for GlimmerHMM_glimmerT_29070-T1
Valid prediction for GeneMark_model.50196_t
Valid prediction for GlimmerHMM_glimmerT_29076-T1
Valid prediction for GeneMark_model.50177_t
Valid prediction for GlimmerHMM_glimmerT_29079-T1
Valid prediction for snap_scaffold_11-snap.3333-T1
Valid prediction for GeneMark_model.50173_t
Valid prediction for GeneMark_model.50189_t
Valid prediction for GeneMark_model.50185_t
Valid prediction for Augustus_model.g19414.t1
Valid prediction for GlimmerHMM_glimmerT_29073-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16164, rend_intergenic: 16139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27627, rend_intergenic: 23082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34913, rend_intergenic: 29308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45185, rend_intergenic: 41152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106812, rend_intergenic: 104641  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132172, rend_intergenic: 130303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 166199
-exon list size: 423


building trellis

0.2    
0.5    
0.7    
0.9    
1.2    
1.4    
1.6    
1.9    
2.1    
2.4    
2.6    
2.8    
3.1    
3.3    
3.5    
3.8    
4.0    
4.2    
4.5    
4.7    
4.9    
5.2    
5.4    
5.6    
5.9    
6.1    
6.4    
6.6    
6.8    
7.1    
7.3    
7.5    
7.8    
8.0    
8.2    
8.5    
8.7    
8.9    
9.2    
9.4    
9.6    
9.9    
10.1    
10.4    
10.6    
10.8    
11.1    
11.3    
11.5    
11.8    
12.0    
12.2    
12.5    
12.7    
12.9    
13.2    
13.4    
13.6    
13.9    
14.1    
14.4    
14.6    
14.8    
15.1    
15.3    
15.5    
15.8    
16.0    
16.2    
16.5    
16.7    
16.9    
17.2    
17.4    
17.6    
17.9    
18.1    
18.4    
18.6    
18.8    
19.1    
19.3    
19.5    
19.8    
20.0    
20.2    
20.5    
20.7    
20.9    
21.2    
21.4    
21.6    
21.9    
22.1    
22.4    
22.6    
22.8    
23.1    
23.3    
23.5    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.2    
25.4    
25.6    
25.9    
26.1    
26.4    
26.6    
26.8    
27.1    
27.3    
27.5    
27.8    
28.0    
28.2    
28.5    
28.7    
28.9    
29.2    
29.4    
29.6    
29.9    
30.1    
30.4    
30.6    
30.8    
31.1    
31.3    
31.5    
31.8    
32.0    
32.2    
32.5    
32.7    
32.9    
33.2    
33.4    
33.6    
33.9    
34.1    
34.4    
34.6    
34.8    
35.1    
35.3    
35.5    
35.8    
36.0    
36.2    
36.5    
36.7    
36.9    
37.2    
37.4    
37.6    
37.9    
38.1    
38.4    
38.6    
38.8    
39.1    
39.3    
39.5    
39.8    
40.0    
40.2    
40.5    
40.7    
40.9    
41.2    
41.4    
41.6    
41.9    
42.1    
42.4    
42.6    
42.8    
43.1    
43.3    
43.5    
43.8    
44.0    
44.2    
44.5    
44.7    
44.9    
45.2    
45.4    
45.6    
45.9    
46.1    
46.4    
46.6    
46.8    
47.1    
47.3    
47.5    
47.8    
48.0    
48.2    
48.5    
48.7    
48.9    
49.2    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.8    
51.1    
51.3    
51.5    
51.8    
52.0    
52.2    
52.5    
52.7    
52.9    
53.2    
53.4    
53.6    
53.9    
54.1    
54.4    
54.6    
54.8    
55.1    
55.3    
55.5    
55.8    
56.0    
56.2    
56.5    
56.7    
56.9    
57.2    
57.4    
57.6    
57.9    
58.1    
58.4    
58.6    
58.8    
59.1    
59.3    
59.5    
59.8    
60.0    
60.2    
60.5    
60.7    
60.9    
61.2    
61.4    
61.6    
61.9    
62.1    
62.4    
62.6    
62.8    
63.1    
63.3    
63.5    
63.8    
64.0    
64.2    
64.5    
64.7    
64.9    
65.2    
65.4    
65.6    
65.9    
66.1    
66.4    
66.6    
66.8    
67.1    
67.3    
67.5    
67.8    
68.0    
68.2    
68.5    
68.7    
68.9    
69.2    
69.4    
69.6    
69.9    
70.1    
70.4    
70.6    
70.8    
71.1    
71.3    
71.5    
71.8    
72.0    
72.2    
72.5    
72.7    
72.9    
73.2    
73.4    
73.6    
73.9    
74.1    
74.4    
74.6    
74.8    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.5    
76.7    
76.9    
77.2    
77.4    
77.6    
77.9    
78.1    
78.4    
78.6    
78.8    
79.1    
79.3    
79.5    
79.8    
80.0    
80.2    
80.5    
80.7    
80.9    
81.2    
81.4    
81.6    
81.9    
82.1    
82.4    
82.6    
82.8    
83.1    
83.3    
83.5    
83.8    
84.0    
84.2    
84.5    
84.7    
84.9    
85.2    
85.4    
85.6    
85.9    
86.1    
86.4    
86.6    
86.8    
87.1    
87.3    
87.5    
87.8    
88.0    
88.2    
88.5    
88.7    
88.9    
89.2    
89.4    
89.6    
89.9    
90.1    
90.4    
90.6    
90.8    
91.1    
91.3    
91.5    
91.8    
92.0    
92.2    
92.5    
92.7    
92.9    
93.2    
93.4    
93.6    
93.9    
94.1    
94.4    
94.6    
94.8    
95.1    
95.3    
95.5    
95.8    
96.0    
96.2    
96.5    
96.7    
96.9    
97.2    
97.4    
97.6    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 16164, rend_intergenic: 16139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27627, rend_intergenic: 23082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34913, rend_intergenic: 29308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45185, rend_intergenic: 41152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106812, rend_intergenic: 104641  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132172, rend_intergenic: 130303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12078
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support