-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_16017522-16171876

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_29063-T1
Valid prediction for GlimmerHMM_glimmerT_29064-T1
Valid prediction for GeneMark_model.50150_t
Valid prediction for GeneMark_model.50163_t
Valid prediction for GlimmerHMM_glimmerT_29046-T1
Valid prediction for GeneMark_model.50162_t
Valid prediction for snap_scaffold_11-snap.3303-T1
Valid prediction for GeneMark_model.50157_t
Valid prediction for GeneMark_model.50161_t
Valid prediction for snap_scaffold_11-snap.3277-T1
Valid prediction for pasa_asmbl_6122.p1
Valid prediction for snap_scaffold_11-snap.3313-T1
Valid prediction for Augustus_model.g19401.t1
Valid prediction for GeneMark_model.50132_t
Valid prediction for snap_scaffold_11-snap.3282-T1
Valid prediction for GeneMark_model.50138_t
Valid prediction for GeneMark_model.50152_t
Valid prediction for GeneMark_model.50131_t
Valid prediction for CodingQuarry_transcript_8298-T1
Valid prediction for GeneMark_model.50147_t
Valid prediction for GlimmerHMM_glimmerT_29057-T1
Valid prediction for snap_scaffold_11-snap.3278-T1
Valid prediction for GeneMark_model.50146_t
Valid prediction for GlimmerHMM_glimmerT_29062-T1
Valid prediction for GeneMark_model.50142_t
Valid prediction for GlimmerHMM_glimmerT_29041-T1
Valid prediction for Augustus_model.g19397.t1
Valid prediction for snap_scaffold_11-snap.3310-T1
Valid prediction for GlimmerHMM_glimmerT_29054-T1
Valid prediction for snap_scaffold_11-snap.3305-T1
Valid prediction for GlimmerHMM_glimmerT_29060-T1
Valid prediction for GeneMark_model.50124_t
Valid prediction for snap_scaffold_11-snap.3281-T1
Valid prediction for Augustus_model.g19395.t1
Valid prediction for GeneMark_model.50135_t
Valid prediction for Augustus_model.g19403.t1
Valid prediction for GeneMark_model.50155_t
Valid prediction for GlimmerHMM_glimmerT_29048-T1
Valid prediction for GlimmerHMM_glimmerT_29058-T1
Valid prediction for GeneMark_model.50145_t
Valid prediction for GlimmerHMM_glimmerT_29044-T1
Valid prediction for snap_scaffold_11-snap.3308-T1
Valid prediction for HiQ_model.g19394.t1
Valid prediction for snap_scaffold_11-snap.3296-T1
Valid prediction for GeneMark_model.50165_t
Valid prediction for GeneMark_model.50140_t
Valid prediction for Augustus_model.g19407.t1
Valid prediction for snap_scaffold_11-snap.3311-T1
Valid prediction for GlimmerHMM_glimmerT_29050-T1
Valid prediction for GeneMark_model.50126_t
Valid prediction for snap_scaffold_11-snap.3295-T1
Valid prediction for GeneMark_model.50159_t
Valid prediction for GlimmerHMM_glimmerT_29055-T1
Valid prediction for snap_scaffold_11-snap.3287-T1
Valid prediction for snap_scaffold_11-snap.3299-T1
Valid prediction for snap_scaffold_11-snap.3293-T1
Valid prediction for snap_scaffold_11-snap.3297-T1
Valid prediction for snap_scaffold_11-snap.3274-T1
Valid prediction for GeneMark_model.50143_t
Valid prediction for GeneMark_model.50133_t
Valid prediction for snap_scaffold_11-snap.3290-T1
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g19406.t1
Valid prediction for GeneMark_model.50144_t
Valid prediction for snap_scaffold_11-snap.3300-T1
Valid prediction for snap_scaffold_11-snap.3283-T1
Valid prediction for snap_scaffold_11-snap.3294-T1
Valid prediction for GlimmerHMM_glimmerT_29043-T1
Valid prediction for snap_scaffold_11-snap.3304-T1
Valid prediction for GeneMark_model.50130_t
Valid prediction for snap_scaffold_11-snap.3285-T1
Valid prediction for GlimmerHMM_glimmerT_29061-T1
Valid prediction for GeneMark_model.50156_t
Valid prediction for snap_scaffold_11-snap.3289-T1
Valid prediction for GlimmerHMM_glimmerT_29052-T1
Valid prediction for Augustus_model.g19399.t1
Valid prediction for GeneMark_model.50151_t
Valid prediction for snap_scaffold_11-snap.3312-T1
Valid prediction for GlimmerHMM_glimmerT_29045-T1
Valid prediction for GeneMark_model.50160_t
Valid prediction for Augustus_model.g19398.t1
Valid prediction for snap_scaffold_11-snap.3307-T1
Valid prediction for GeneMark_model.50141_t
Valid prediction for snap_scaffold_11-snap.3275-T1
Valid prediction for GeneMark_model.50139_t
Valid prediction for GeneMark_model.50123_t
Valid prediction for snap_scaffold_11-snap.3314-T1
Valid prediction for GlimmerHMM_glimmerT_29051-T1
Valid prediction for snap_scaffold_11-snap.3292-T1
Valid prediction for snap_scaffold_11-snap.3286-T1
Valid prediction for pasa_asmbl_7197.p1
Valid prediction for GeneMark_model.50128_t
Valid prediction for GeneMark_model.50134_t
Valid prediction for snap_scaffold_11-snap.3291-T1
Valid prediction for GeneMark_model.50127_t
Valid prediction for CodingQuarry_transcript_8297-T1
Valid prediction for GlimmerHMM_glimmerT_29047-T1
Valid prediction for GeneMark_model.50136_t
Valid prediction for Augustus_model.g19402.t1
Valid prediction for Augustus_model.g19393.t1
Valid prediction for GlimmerHMM_glimmerT_29059-T1
Valid prediction for GeneMark_model.50158_t
Valid prediction for GeneMark_model.50129_t
Valid prediction for GeneMark_model.50164_t
Valid prediction for Augustus_model.g19400.t1
Valid prediction for snap_scaffold_11-snap.3276-T1
Valid prediction for Augustus_model.g19405.t1
Valid prediction for snap_scaffold_11-snap.3288-T1
Valid prediction for snap_scaffold_11-snap.3302-T1
Valid prediction for GlimmerHMM_glimmerT_29049-T1
Valid prediction for snap_scaffold_11-snap.3279-T1
Valid prediction for snap_scaffold_11-snap.3306-T1
Valid prediction for Augustus_model.g19396.t1
Valid prediction for GeneMark_model.50137_t
Valid prediction for GlimmerHMM_glimmerT_29053-T1
Valid prediction for snap_scaffold_11-snap.3301-T1
Valid prediction for snap_scaffold_11-snap.3273-T1
Valid prediction for snap_scaffold_11-snap.3309-T1
Valid prediction for Augustus_model.g19408.t1
Valid prediction for GeneMark_model.50125_t
Valid prediction for GeneMark_model.50154_t
Valid prediction for GlimmerHMM_glimmerT_29056-T1
Valid prediction for snap_scaffold_11-snap.3298-T1
Valid prediction for GeneMark_model.50153_t
Valid prediction for Augustus_model.g19404.t1
Valid prediction for GeneMark_model.50166_t
Valid prediction for snap_scaffold_11-snap.3280-T1
Valid prediction for snap_scaffold_11-snap.3284-T1
Valid prediction for GeneMark_model.50149_t
Valid prediction for GlimmerHMM_glimmerT_29042-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10514, rend_intergenic: 7363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15223, rend_intergenic: 13508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24013, rend_intergenic: 17123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34540, rend_intergenic: 29433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57689, rend_intergenic: 54507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59639, rend_intergenic: 57709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64420, rend_intergenic: 62630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68616, rend_intergenic: 65615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76919, rend_intergenic: 72643  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83250, rend_intergenic: 82323  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95146, rend_intergenic: 83795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113146, rend_intergenic: 112768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120139, rend_intergenic: 114621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137763, rend_intergenic: 135919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143424, rend_intergenic: 138235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148886, rend_intergenic: 145085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 154355
-exon list size: 507


building trellis

0.2    
0.4    
0.6    
0.8    
1.0    
1.2    
1.4    
1.6    
1.8    
2.0    
2.2    
2.4    
2.6    
2.8    
2.9    
3.1    
3.3    
3.5    
3.7    
3.9    
4.1    
4.3    
4.5    
4.7    
4.9    
5.1    
5.3    
5.5    
5.7    
5.9    
6.1    
6.3    
6.5    
6.7    
6.9    
7.1    
7.3    
7.5    
7.7    
7.9    
8.1    
8.3    
8.4    
8.6    
8.8    
9.0    
9.2    
9.4    
9.6    
9.8    
10.0    
10.2    
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10.6    
10.8    
11.0    
11.2    
11.4    
11.6    
11.8    
12.0    
12.2    
12.4    
12.6    
12.8    
13.0    
13.2    
13.4    
13.6    
13.8    
13.9    
14.1    
14.3    
14.5    
14.7    
14.9    
15.1    
15.3    
15.5    
15.7    
15.9    
16.1    
16.3    
16.5    
16.7    
16.9    
17.1    
17.3    
17.5    
17.7    
17.9    
18.1    
18.3    
18.5    
18.7    
18.9    
19.1    
19.3    
19.4    
19.6    
19.8    
20.0    
20.2    
20.4    
20.6    
20.8    
21.0    
21.2    
21.4    
21.6    
21.8    
22.0    
22.2    
22.4    
22.6    
22.8    
23.0    
23.2    
23.4    
23.6    
23.8    
24.0    
24.2    
24.4    
24.6    
24.8    
25.0    
25.1    
25.3    
25.5    
25.7    
25.9    
26.1    
26.3    
26.5    
26.7    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.1    
28.3    
28.5    
28.7    
28.9    
29.1    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.5    
30.6    
30.8    
31.0    
31.2    
31.4    
31.6    
31.8    
32.0    
32.2    
32.4    
32.6    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.0    
34.2    
34.4    
34.6    
34.8    
35.0    
35.2    
35.4    
35.6    
35.8    
36.0    
36.1    
36.3    
36.5    
36.7    
36.9    
37.1    
37.3    
37.5    
37.7    
37.9    
38.1    
38.3    
38.5    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
39.9    
40.1    
40.3    
40.5    
40.7    
40.9    
41.1    
41.3    
41.5    
41.7    
41.8    
42.0    
42.2    
42.4    
42.6    
42.8    
43.0    
43.2    
43.4    
43.6    
43.8    
44.0    
44.2    
44.4    
44.6    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
47.0    
47.2    
47.3    
47.5    
47.7    
47.9    
48.1    
48.3    
48.5    
48.7    
48.9    
49.1    
49.3    
49.5    
49.7    
49.9    
50.1    
50.3    
50.5    
50.7    
50.9    
51.1    
51.3    
51.5    
51.7    
51.9    
52.1    
52.3    
52.5    
52.7    
52.8    
53.0    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.4    
55.6    
55.8    
56.0    
56.2    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.8    
58.0    
58.2    
58.3    
58.5    
58.7    
58.9    
59.1    
59.3    
59.5    
59.7    
59.9    
60.1    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.5    
61.7    
61.9    
62.1    
62.3    
62.5    
62.7    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.0    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
65.4    
65.6    
65.8    
66.0    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.2    
68.4    
68.6    
68.8    
69.0    
69.2    
69.4    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.9    
71.1    
71.3    
71.5    
71.7    
71.9    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.0    
75.2    
75.4    
75.6    
75.8    
76.0    
76.2    
76.4    
76.6    
76.8    
77.0    
77.2    
77.4    
77.6    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.4    
79.6    
79.8    
80.0    
80.2    
80.4    
80.6    
80.7    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.1    
82.3    
82.5    
82.7    
82.9    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.2    
86.4    
86.6    
86.8    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.7    
91.9    
92.1    
92.3    
92.5    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.1    
94.3    
94.5    
94.7    
94.9    
95.1    
95.3    
95.5    
95.7    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.1    
97.2    
97.4    
97.6    
97.8    
98.0    
98.2    
98.4    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 10514, rend_intergenic: 7363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15223, rend_intergenic: 13508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24013, rend_intergenic: 17123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34540, rend_intergenic: 29433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57689, rend_intergenic: 54507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59639, rend_intergenic: 57709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64420, rend_intergenic: 62630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68616, rend_intergenic: 65615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76919, rend_intergenic: 72643  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83250, rend_intergenic: 82323  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95146, rend_intergenic: 83795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113146, rend_intergenic: 112768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120139, rend_intergenic: 114621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137763, rend_intergenic: 135919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143424, rend_intergenic: 138235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148886, rend_intergenic: 145085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support