-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_1380399-1553122

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.46705_t
Valid prediction for GlimmerHMM_glimmerT_27033-T1
Valid prediction for snap_scaffold_11-snap.356-T1
Valid prediction for GlimmerHMM_glimmerT_27015-T1
Valid prediction for snap_scaffold_11-snap.332-T1
Valid prediction for GeneMark_model.46668_t
Valid prediction for GeneMark_model.46693_t
Valid prediction for snap_scaffold_11-snap.328-T1
Valid prediction for GeneMark_model.46683_t
Valid prediction for snap_scaffold_11-snap.346-T1
Valid prediction for snap_scaffold_11-snap.345-T1
Valid prediction for snap_scaffold_11-snap.334-T1
Valid prediction for GlimmerHMM_glimmerT_27030-T1
Valid prediction for GeneMark_model.46710_t
Valid prediction for GeneMark_model.46708_t
Valid prediction for snap_scaffold_11-snap.363-T1
Valid prediction for GlimmerHMM_glimmerT_27021-T1
Valid prediction for GlimmerHMM_glimmerT_27026-T1
Valid prediction for GlimmerHMM_glimmerT_27042-T1
Valid prediction for GlimmerHMM_glimmerT_27018-T1
Valid prediction for GeneMark_model.46672_t
Valid prediction for GeneMark_model.46666_t
Valid prediction for GeneMark_model.46696_t
Valid prediction for snap_scaffold_11-snap.355-T1
Valid prediction for snap_scaffold_11-snap.352-T1
Valid prediction for snap_scaffold_11-snap.339-T1
Valid prediction for snap_scaffold_11-snap.349-T1
Valid prediction for snap_scaffold_11-snap.341-T1
Valid prediction for GeneMark_model.46701_t
Valid prediction for GeneMark_model.46690_t
Valid prediction for GeneMark_model.46674_t
Valid prediction for snap_scaffold_11-snap.336-T1
Valid prediction for Augustus_model.g18062.t1
Valid prediction for GlimmerHMM_glimmerT_27035-T1
Valid prediction for GlimmerHMM_glimmerT_27028-T1
Valid prediction for GeneMark_model.46676_t
Valid prediction for GlimmerHMM_glimmerT_27022-T1
Valid prediction for GeneMark_model.46688_t
Valid prediction for GlimmerHMM_glimmerT_27032-T1
Valid prediction for snap_scaffold_11-snap.330-T1
Valid prediction for GeneMark_model.46691_t
Valid prediction for GeneMark_model.46689_t
Valid prediction for GeneMark_model.46699_t
Valid prediction for snap_scaffold_11-snap.357-T1
Valid prediction for snap_scaffold_11-snap.361-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.46706_t
Valid prediction for snap_scaffold_11-snap.326-T1
Valid prediction for snap_scaffold_11-snap.358-T1
Valid prediction for GeneMark_model.46692_t
Valid prediction for GeneMark_model.46686_t
Valid prediction for GeneMark_model.46711_t
Valid prediction for GeneMark_model.46680_t
Valid prediction for snap_scaffold_11-snap.343-T1
Valid prediction for GeneMark_model.46684_t
Valid prediction for snap_scaffold_11-snap.359-T1
Valid prediction for GlimmerHMM_glimmerT_27016-T1
Valid prediction for GeneMark_model.46682_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.46679_t
Valid prediction for Augustus_model.g18071.t1
Valid prediction for pasa_asmbl_6406.p1
Valid prediction for HiQ_model.g18065.t1
Valid prediction for GlimmerHMM_glimmerT_27024-T1
Valid prediction for GlimmerHMM_glimmerT_27041-T1
Valid prediction for GlimmerHMM_glimmerT_27036-T1
Valid prediction for snap_scaffold_11-snap.348-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g18072.t1
Valid prediction for GeneMark_model.46670_t
Valid prediction for HiQ_model.g18064.t1
Valid prediction for Augustus_model.g18068.t1
Valid prediction for GeneMark_model.46697_t
Valid prediction for GlimmerHMM_glimmerT_27029-T1
Valid prediction for GeneMark_model.46675_t
Valid prediction for snap_scaffold_11-snap.368-T1
Valid prediction for GeneMark_model.46685_t
Valid prediction for GlimmerHMM_glimmerT_27020-T1
Valid prediction for Augustus_model.g18073.t1
Valid prediction for GeneMark_model.46687_t
Valid prediction for snap_scaffold_11-snap.353-T1
Valid prediction for GlimmerHMM_glimmerT_27025-T1
Valid prediction for GeneMark_model.46695_t
Valid prediction for GeneMark_model.46698_t
Valid prediction for snap_scaffold_11-snap.367-T1
Valid prediction for Augustus_model.g18066.t1
Valid prediction for snap_scaffold_11-snap.366-T1
Valid prediction for snap_scaffold_11-snap.337-T1
Valid prediction for snap_scaffold_11-snap.351-T1
Valid prediction for snap_scaffold_11-snap.325-T1
Valid prediction for GlimmerHMM_glimmerT_27039-T1
Valid prediction for GeneMark_model.46700_t
Valid prediction for Augustus_model.g18063.t1
Valid prediction for GeneMark_model.46678_t
Valid prediction for snap_scaffold_11-snap.362-T1
Valid prediction for GeneMark_model.46671_t
Valid prediction for GeneMark_model.46669_t
Valid prediction for GeneMark_model.46673_t
Valid prediction for GeneMark_model.46681_t
Valid prediction for GlimmerHMM_glimmerT_27017-T1
Valid prediction for GlimmerHMM_glimmerT_27043-T1
Valid prediction for GlimmerHMM_glimmerT_27027-T1
Valid prediction for Augustus_model.g18070.t1
Valid prediction for snap_scaffold_11-snap.342-T1
Valid prediction for snap_scaffold_11-snap.344-T1
Valid prediction for GlimmerHMM_glimmerT_27038-T1
Valid prediction for GeneMark_model.46677_t
Valid prediction for snap_scaffold_11-snap.333-T1
Valid prediction for GlimmerHMM_glimmerT_27037-T1
Valid prediction for GeneMark_model.46712_t
Valid prediction for GeneMark_model.46667_t
Valid prediction for GeneMark_model.46707_t
Valid prediction for GeneMark_model.46704_t
Valid prediction for snap_scaffold_11-snap.360-T1
Valid prediction for snap_scaffold_11-snap.369-T1
Valid prediction for snap_scaffold_11-snap.327-T1
Valid prediction for snap_scaffold_11-snap.329-T1
Valid prediction for snap_scaffold_11-snap.347-T1
Valid prediction for snap_scaffold_11-snap.364-T1
Valid prediction for snap_scaffold_11-snap.335-T1
Valid prediction for Augustus_model.g18074.t1
Valid prediction for GeneMark_model.46703_t
Valid prediction for GeneMark_model.46709_t
Valid prediction for snap_scaffold_11-snap.338-T1
Valid prediction for GlimmerHMM_glimmerT_27040-T1
Valid prediction for snap_scaffold_11-snap.331-T1
Valid prediction for GlimmerHMM_glimmerT_27031-T1
Valid prediction for CodingQuarry_transcript_7942-T1
Valid prediction for GlimmerHMM_glimmerT_27019-T1
Valid prediction for GlimmerHMM_glimmerT_27034-T1
Valid prediction for Augustus_model.g18069.t1
Valid prediction for snap_scaffold_11-snap.365-T1
Valid prediction for snap_scaffold_11-snap.354-T1
Valid prediction for snap_scaffold_11-snap.350-T1
Valid prediction for snap_scaffold_11-snap.340-T1
Valid prediction for Augustus_model.g18067.t1
Valid prediction for GlimmerHMM_glimmerT_27023-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8168, rend_intergenic: 4613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9000, rend_intergenic: 8962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12393, rend_intergenic: 9375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35879, rend_intergenic: 31409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37059, rend_intergenic: 35933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40334, rend_intergenic: 37213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48837, rend_intergenic: 44010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56721, rend_intergenic: 54822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71409, rend_intergenic: 63012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78333, rend_intergenic: 73553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78670, rend_intergenic: 78391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93943, rend_intergenic: 79761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95276, rend_intergenic: 93992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102228, rend_intergenic: 99065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103538, rend_intergenic: 103214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109551, rend_intergenic: 105657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110988, rend_intergenic: 109637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129130, rend_intergenic: 113202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133979, rend_intergenic: 133326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135492, rend_intergenic: 134000  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148735, rend_intergenic: 140410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 172724
-exon list size: 785


building trellis

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94.8    
94.9    
95.0    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.4    
96.6    
96.7    
96.8    
97.0    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.8    
98.0    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.9    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.9    
-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 8168, rend_intergenic: 4613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9000, rend_intergenic: 8962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12393, rend_intergenic: 9375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35879, rend_intergenic: 31409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37059, rend_intergenic: 35933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40334, rend_intergenic: 37213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48837, rend_intergenic: 44010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56721, rend_intergenic: 54822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71409, rend_intergenic: 63012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78333, rend_intergenic: 73553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78670, rend_intergenic: 78391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93943, rend_intergenic: 79761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95276, rend_intergenic: 93992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102228, rend_intergenic: 99065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103538, rend_intergenic: 103214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109551, rend_intergenic: 105657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110988, rend_intergenic: 109637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129130, rend_intergenic: 113202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133979, rend_intergenic: 133326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135492, rend_intergenic: 134000  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148735, rend_intergenic: 140410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support