-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_11679233-11910916

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.49265_t
Valid prediction for GeneMark_model.49232_t
Valid prediction for GeneMark_model.49243_t
Valid prediction for Augustus_model.g19039.t1
Valid prediction for GeneMark_model.49272_t
Valid prediction for Augustus_model.g19041.t1
Valid prediction for GlimmerHMM_glimmerT_28545-T1
Valid prediction for GlimmerHMM_glimmerT_28530-T1
Valid prediction for snap_scaffold_11-snap.2547-T1
Couldn't classify 90111, 90149
Sorry, prediction pasa_asmbl_5959.p1 fails validation.
(TTC)	 AG	90111-90149	GT	AGG
(GAG)	 AG	90294-90476	GT	AGG
(ATC)	 AG	90625-90785	GT	AGG
(TGC)	 AG	90998-91112	GT	AGG
(GAT)	 AG	91210-91326	GT	TGG
(TGT)	 AG	91564-91714	GT	AGG
(ACT)	 AG	92184-92203	GG	GAG
-recovered pasa_asmbl_5959.p1, terminal, 92184, 92203
-recovered pasa_asmbl_5959.p1, internal, 90111, 90149
-recovered pasa_asmbl_5959.p1, internal, 90294, 90476
-recovered pasa_asmbl_5959.p1, internal, 90625, 90785
-recovered pasa_asmbl_5959.p1, internal, 90998, 91112
-recovered pasa_asmbl_5959.p1, internal, 91210, 91326
-recovered pasa_asmbl_5959.p1, internal, 91564, 91714
Valid prediction for GeneMark_model.49245_t
Valid prediction for GeneMark_model.49251_t
Valid prediction for GlimmerHMM_glimmerT_28540-T1
Valid prediction for GlimmerHMM_glimmerT_28527-T1
Valid prediction for GeneMark_model.49263_t
Valid prediction for GeneMark_model.49226_t
Valid prediction for Augustus_model.g19038.t1
Valid prediction for GeneMark_model.49249_t
Valid prediction for GlimmerHMM_glimmerT_28525-T1
Valid prediction for GeneMark_model.49261_t
Valid prediction for GeneMark_model.49259_t
Valid prediction for snap_scaffold_11-snap.2513-T1
Valid prediction for snap_scaffold_11-snap.2541-T1
Valid prediction for GlimmerHMM_glimmerT_28542-T1
Valid prediction for snap_scaffold_11-snap.2524-T1
Valid prediction for GlimmerHMM_glimmerT_28524-T1
Valid prediction for GlimmerHMM_glimmerT_28518-T1
Valid prediction for snap_scaffold_11-snap.2538-T1
Valid prediction for GeneMark_model.49250_t
Valid prediction for GeneMark_model.49283_t
Valid prediction for GlimmerHMM_glimmerT_28534-T1
Valid prediction for GlimmerHMM_glimmerT_28522-T1
Valid prediction for GlimmerHMM_glimmerT_28541-T1
Valid prediction for Augustus_model.g19052.t1
Valid prediction for snap_scaffold_11-snap.2522-T1
Valid prediction for Augustus_model.g19051.t1
Valid prediction for snap_scaffold_11-snap.2518-T1
Valid prediction for snap_scaffold_11-snap.2556-T1
Valid prediction for HiQ_model.g19054.t1
Valid prediction for GeneMark_model.49238_t
Valid prediction for GeneMark_model.49281_t
Valid prediction for snap_scaffold_11-snap.2555-T1
Valid prediction for snap_scaffold_11-snap.2515-T1
Valid prediction for GeneMark_model.49230_t
Couldn't classify 37295, 37684
Sorry, prediction pasa_asmbl_5957.p1 fails validation.
(CAC)	 CG	37295-37684	AG	TAA
Valid prediction for GeneMark_model.49262_t
Valid prediction for GlimmerHMM_glimmerT_28531-T1
Valid prediction for GeneMark_model.49268_t
Valid prediction for GeneMark_model.49253_t
Valid prediction for GlimmerHMM_glimmerT_28523-T1
Valid prediction for CodingQuarry_transcript_8216-T1
Valid prediction for GlimmerHMM_glimmerT_28546-T1
Valid prediction for GlimmerHMM_glimmerT_28520-T1
Valid prediction for GlimmerHMM_glimmerT_28537-T1
Couldn't classify 84366, 84461
Couldn't classify 85183, 85270
Sorry, prediction pasa_asmbl_6276.p1 fails validation.
(GAC)	 AG	84366-84461	GT	GGG
(ATC)	 AG	84621-84751	GT	AGG
(GGC)	 AG	85183-85270	CG	ACC
-recovered pasa_asmbl_6276.p1, internal, 84366, 84461
-recovered pasa_asmbl_6276.p1, internal, 84621, 84751
Valid prediction for Augustus_model.g19047.t1
Valid prediction for snap_scaffold_11-snap.2521-T1
Valid prediction for snap_scaffold_11-snap.2542-T1
Valid prediction for CodingQuarry_transcript_8217-T1
Valid prediction for GeneMark_model.49279_t
Valid prediction for snap_scaffold_11-snap.2531-T1
Valid prediction for snap_scaffold_11-snap.2545-T1
Valid prediction for GeneMark_model.49255_t
Valid prediction for snap_scaffold_11-snap.2557-T1
Valid prediction for GlimmerHMM_glimmerT_28515-T1
Valid prediction for snap_scaffold_11-snap.2533-T1
Couldn't classify 223130, 223201
Couldn't classify 223989, 224060
Sorry, prediction pasa_asmbl_5968.p2 fails validation.
(TGT)	 AG	223130-223201	GT	AGG
(GGG)	 AG	223497-223625	GT	AGG
(GAG)	 AG	223775-223885	GT	AGG
(GAG)	 AG	223989-224060	AA	ACA
-recovered pasa_asmbl_5968.p2, internal, 223130, 223201
-recovered pasa_asmbl_5968.p2, internal, 223497, 223625
-recovered pasa_asmbl_5968.p2, internal, 223775, 223885
Valid prediction for snap_scaffold_11-snap.2549-T1
Valid prediction for GeneMark_model.49266_t
Valid prediction for snap_scaffold_11-snap.2516-T1
Valid prediction for GeneMark_model.49241_t
Valid prediction for GlimmerHMM_glimmerT_28543-T1
Valid prediction for Augustus_model.g19055.t1
Valid prediction for snap_scaffold_11-snap.2527-T1
Valid prediction for GlimmerHMM_glimmerT_28516-T1
Valid prediction for Augustus_model.g19044.t1
Valid prediction for snap_scaffold_11-snap.2551-T1
Valid prediction for snap_scaffold_11-snap.2544-T1
Valid prediction for CodingQuarry_transcript_8220-T1
Valid prediction for GlimmerHMM_glimmerT_28526-T1
Valid prediction for GeneMark_model.49236_t
Valid prediction for snap_scaffold_11-snap.2520-T1
Valid prediction for GeneMark_model.49270_t
Valid prediction for GeneMark_model.49247_t
Valid prediction for GeneMark_model.49275_t
Valid prediction for snap_scaffold_11-snap.2543-T1
Valid prediction for Augustus_model.g19056.t1
Valid prediction for GeneMark_model.49235_t
Couldn't classify 67118, 67342
Sorry, prediction pasa_asmbl_6254.p1 fails validation.
(AGG)	 AC	67118-67342	GT	AGG
(GTG)	 AG	67508-67756	GT	CGG
(GTC)	 AG	67943-68260	CA	AGC
-recovered pasa_asmbl_6254.p1, terminal, 67943, 68260
-recovered pasa_asmbl_6254.p1, internal, 67508, 67756
Valid prediction for CodingQuarry_transcript_8215-T1
Valid prediction for GeneMark_model.49273_t
Valid prediction for GlimmerHMM_glimmerT_28539-T1
Valid prediction for Augustus_model.g19037.t1
Valid prediction for pasa_asmbl_5963.p1
Valid prediction for Augustus_model.g19053.t1
Valid prediction for snap_scaffold_11-snap.2532-T1
Valid prediction for GlimmerHMM_glimmerT_28544-T1
Valid prediction for GeneMark_model.49227_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.49260_t
Valid prediction for snap_scaffold_11-snap.2523-T1
Valid prediction for GeneMark_model.49257_t
Valid prediction for Augustus_model.g19042.t1
Valid prediction for snap_scaffold_11-snap.2558-T1
Valid prediction for GlimmerHMM_glimmerT_28521-T1
Valid prediction for CodingQuarry_transcript_8213-T1
Valid prediction for snap_scaffold_11-snap.2528-T1
Valid prediction for GeneMark_model.49244_t
Valid prediction for GeneMark_model.49276_t
Valid prediction for pasa_asmbl_7005.p1
Valid prediction for snap_scaffold_11-snap.2554-T1
Valid prediction for GlimmerHMM_glimmerT_28533-T1
Couldn't classify 97142, 97253
Couldn't classify 97668, 97749
Sorry, prediction pasa_asmbl_7015.p1 fails validation.
(GCG)	 AG	97142-97253	GT	AGG
(AGC)	 AG	97454-97580	GT	AGG
(GTA)	 AG	97668-97749	GC	GGG
-recovered pasa_asmbl_7015.p1, internal, 97142, 97253
-recovered pasa_asmbl_7015.p1, internal, 97454, 97580
-recovered pasa_asmbl_7015.p1, internal, 97668, 97749
Valid prediction for CodingQuarry_transcript_8214-T1
Valid prediction for GeneMark_model.49278_t
Valid prediction for snap_scaffold_11-snap.2530-T1
Valid prediction for snap_scaffold_11-snap.2517-T1
Valid prediction for GeneMark_model.49246_t
Valid prediction for GlimmerHMM_glimmerT_28538-T1
Couldn't classify 121933, 122028
Sorry, prediction pasa_asmbl_7268.p1 fails validation.
(ATG)	 GG	118544-118716	GT	AGG
(TGT)	 AG	119549-119610	GT	AGG
(ATG)	 AG	119729-119841	GT	AGG
(GTT)	 AG	119919-119991	GT	GGG
(ATA)	 AG	120141-120406	GT	AGG
(GCT)	 AG	120524-120630	GT	GGG
(CGT)	 AG	120790-120875	GT	AGG
(CTC)	 AG	120992-121049	GT	AGG
(GAG)	 AG	121132-121201	GT	CTG
(CAG)	 AG	121340-121492	GT	AGG
(GAG)	 AG	121607-121738	GT	AGG
(GTG)	 AG	121933-122028	AA	CCA
-recovered pasa_asmbl_7268.p1, initial, 118544, 118716
add_exon() Sorry, pasa_asmbl_7268.p1 119729-119841-initial-1 is invalid.
-recovered pasa_asmbl_7268.p1, initial, 119729, 119841
-recovered pasa_asmbl_7268.p1, internal, 119549, 119610
-recovered pasa_asmbl_7268.p1, internal, 119729, 119841
-recovered pasa_asmbl_7268.p1, internal, 119919, 119991
-recovered pasa_asmbl_7268.p1, internal, 120141, 120406
-recovered pasa_asmbl_7268.p1, internal, 120524, 120630
-recovered pasa_asmbl_7268.p1, internal, 120790, 120875
-recovered pasa_asmbl_7268.p1, internal, 120992, 121049
-recovered pasa_asmbl_7268.p1, internal, 121132, 121201
-recovered pasa_asmbl_7268.p1, internal, 121340, 121492
-recovered pasa_asmbl_7268.p1, internal, 121607, 121738
Valid prediction for GeneMark_model.49256_t
Valid prediction for GeneMark_model.49229_t
Valid prediction for GlimmerHMM_glimmerT_28535-T1
Valid prediction for snap_scaffold_11-snap.2552-T1
Valid prediction for HiQ_model.g19045.t1
Valid prediction for CodingQuarry_transcript_8218-T1
Valid prediction for GeneMark_model.49254_t
Valid prediction for GeneMark_model.49267_t
Valid prediction for GeneMark_model.49242_t
Valid prediction for snap_scaffold_11-snap.2548-T1
Valid prediction for pasa_asmbl_7007.p1
Couldn't classify 98860, 98982
Couldn't classify 99118, 99294
Sorry, prediction pasa_asmbl_7014.p1 fails validation.
(CAG)	 AG	98860-98982	GT	AGG
(CTG)	 AG	99118-99294	AC	ACA
-recovered pasa_asmbl_7014.p1, internal, 98860, 98982
Valid prediction for Augustus_model.g19046.t1
Valid prediction for snap_scaffold_11-snap.2529-T1
Valid prediction for GlimmerHMM_glimmerT_28532-T1
Valid prediction for GeneMark_model.49277_t
Valid prediction for snap_scaffold_11-snap.2536-T1
Couldn't classify 109319, 110203
Couldn't classify 111123, 111299
Sorry, prediction pasa_asmbl_7011.p1 fails validation.
(CTC)	 GC	109319-110203	GT	TGG
(ACT)	 AG	110819-110989	GT	AGG
(ACC)	 AG	111123-111299	TA	CGT
-recovered pasa_asmbl_7011.p1, internal, 110819, 110989
Valid prediction for GeneMark_model.49228_t
Valid prediction for GeneMark_model.49280_t
Valid prediction for snap_scaffold_11-snap.2514-T1
Valid prediction for GeneMark_model.49231_t
Valid prediction for HiQ_model.g19049.t1
Valid prediction for GlimmerHMM_glimmerT_28519-T1
Valid prediction for snap_scaffold_11-snap.2550-T1
Valid prediction for GeneMark_model.49239_t
Valid prediction for Augustus_model.g19040.t1
Couldn't classify 103563, 103584
Couldn't classify 104552, 104610
Sorry, prediction pasa_asmbl_7012.p1 fails validation.
(AGC)	 GC	103563-103584	GT	GGG
(GAA)	 AG	103718-103902	GT	AGG
(CTC)	 AG	104184-104346	GT	GGG
(GCC)	 AG	104552-104610	GA	AGG
-recovered pasa_asmbl_7012.p1, internal, 103718, 103902
-recovered pasa_asmbl_7012.p1, internal, 104184, 104346
Valid prediction for snap_scaffold_11-snap.2553-T1
Valid prediction for GeneMark_model.49252_t
Valid prediction for GeneMark_model.49258_t
Valid prediction for HiQ_model.g19048.t1
Valid prediction for GlimmerHMM_glimmerT_28536-T1
Valid prediction for snap_scaffold_11-snap.2546-T1
Valid prediction for GeneMark_model.49264_t
Valid prediction for GeneMark_model.49269_t
Valid prediction for HiQ_model.g19043.t1
Valid prediction for GeneMark_model.49234_t
Couldn't classify 93767, 93783
Couldn't classify 93972, 94254
Sorry, prediction pasa_asmbl_7016.p1 fails validation.
(GAG)	 TG	93767-93783	GT	AGG
(GTG)	 AG	93972-94254	GA	AGG
Valid prediction for snap_scaffold_11-snap.2519-T1
Valid prediction for GeneMark_model.49240_t
Valid prediction for snap_scaffold_11-snap.2534-T1
Valid prediction for GlimmerHMM_glimmerT_28517-T1
Couldn't classify 92605, 93066
Sorry, prediction pasa_asmbl_7017.p2 fails validation.
(GAC)	 CC	92605-93066	AA	GCA
Couldn't classify 100668, 100730
Couldn't classify 102890, 103024
Sorry, prediction pasa_asmbl_7013.p1 fails validation.
(GCT)	 TA	100668-100730	GT	AGG
(GTG)	 AG	100867-100971	GT	AGG
(GAG)	 AG	101133-101285	GT	AAG
(GCG)	 AG	102108-102254	GT	AGG
(CTG)	 AG	102890-103024	GA	AGG
-recovered pasa_asmbl_7013.p1, internal, 100867, 100971
-recovered pasa_asmbl_7013.p1, internal, 101133, 101285
-recovered pasa_asmbl_7013.p1, internal, 102108, 102254
Valid prediction for GeneMark_model.49233_t
Couldn't classify 76071, 76114
Couldn't classify 76352, 76416
Sorry, prediction CodingQuarry_transcript_8219-T1 fails validation.
(ATG)	 CC	75757-75859	GT	GTG
(CCC)	 AG	76071-76114	AT	GGA
(GTC)	 AC	76352-76416	GT	GTG
(CCA)	 AG	76569-76718	GT	CGG
(TAT)	 AG	76912-77053	GT	TGG
(GGT)	 AG	77179-77319	GT	TGG
(GTT)	 AG	77440-77560	GT	AGG
(GGT)	 AG	77673-77848	GT	AGG
(GTG)	 AG	78030-78152	GT	AGG
(CCC)	 AG	78387-78574	GT	AGG
(GTC)	 AG	78785-78938	GT	CGG
(GTG)	 AG	79209-79388	GT	CGG
(TGG)	 AG	79620-79832	GT	AGG
(CCG)	 AG	79929-80161	GT	GGG
(GAC)	 AG	80296-80413	GT	AGG
(ATC)	 AG	80607-80877	GT	AGG
(AGT)	 AG	81047-81192	GT	AGG
(GTG)	 AG	81367-81375	CT	AAC
-recovered CodingQuarry_transcript_8219-T1, initial, 75757, 75859
-recovered CodingQuarry_transcript_8219-T1, terminal, 81367, 81375
-recovered CodingQuarry_transcript_8219-T1, internal, 76569, 76718
-recovered CodingQuarry_transcript_8219-T1, internal, 76912, 77053
-recovered CodingQuarry_transcript_8219-T1, internal, 77179, 77319
-recovered CodingQuarry_transcript_8219-T1, internal, 77440, 77560
-recovered CodingQuarry_transcript_8219-T1, internal, 77673, 77848
-recovered CodingQuarry_transcript_8219-T1, internal, 78030, 78152
-recovered CodingQuarry_transcript_8219-T1, internal, 78387, 78574
-recovered CodingQuarry_transcript_8219-T1, internal, 78785, 78938
-recovered CodingQuarry_transcript_8219-T1, internal, 79209, 79388
-recovered CodingQuarry_transcript_8219-T1, internal, 79620, 79832
-recovered CodingQuarry_transcript_8219-T1, internal, 79929, 80161
-recovered CodingQuarry_transcript_8219-T1, internal, 80296, 80413
-recovered CodingQuarry_transcript_8219-T1, internal, 80607, 80877
-recovered CodingQuarry_transcript_8219-T1, internal, 81047, 81192
Valid prediction for snap_scaffold_11-snap.2525-T1
Valid prediction for snap_scaffold_11-snap.2537-T1
Couldn't classify 112353, 112553
Sorry, prediction pasa_asmbl_7009.p1 fails validation.
(GCC)	 CG	112353-112553	GT	AGG
(ACT)	 AG	112746-112885	GT	AGG
(GTT)	 AG	113004-113133	GT	AGG
(GCA)	 AG	113220-114023	GT	TGG
(AGC)	 AG	114252-114461	GT	AGG
(TCG)	 AG	114621-114836	GT	AGG
(GTG)	 AG	114962-115188	GT	AGG
(ACT)	 AG	115287-115369	GT	AGG
(GAT)	 AG	115471-115615	GT	AGG
(GGG)	 AG	115810-115937	GT	AGG
(GTT)	 AG	116934-116977	AC	GAA
-recovered pasa_asmbl_7009.p1, terminal, 116934, 116977
-recovered pasa_asmbl_7009.p1, internal, 112746, 112885
-recovered pasa_asmbl_7009.p1, internal, 113004, 113133
-recovered pasa_asmbl_7009.p1, internal, 113220, 114023
-recovered pasa_asmbl_7009.p1, internal, 114252, 114461
-recovered pasa_asmbl_7009.p1, internal, 114621, 114836
-recovered pasa_asmbl_7009.p1, internal, 114962, 115188
-recovered pasa_asmbl_7009.p1, internal, 115287, 115369
-recovered pasa_asmbl_7009.p1, internal, 115471, 115615
-recovered pasa_asmbl_7009.p1, internal, 115810, 115937
Valid prediction for snap_scaffold_11-snap.2535-T1
Valid prediction for GlimmerHMM_glimmerT_28528-T1
Valid prediction for snap_scaffold_11-snap.2540-T1
Valid prediction for GeneMark_model.49248_t
Valid prediction for Augustus_model.g19036.t1
Valid prediction for GeneMark_model.49282_t
Valid prediction for snap_scaffold_11-snap.2539-T1
Valid prediction for snap_scaffold_11-snap.2526-T1
Valid prediction for GeneMark_model.49237_t
Valid prediction for GeneMark_model.49271_t
Couldn't classify 111406, 111744
Couldn't classify 112025, 112155
Sorry, prediction pasa_asmbl_7010.p1 fails validation.
(GAT)	 TA	111406-111744	GT	AAG
(GTG)	 AG	111830-111932	GT	CAG
(ATG)	 AG	112025-112155	AG	GCA
-recovered pasa_asmbl_7010.p1, internal, 111830, 111932
Couldn't classify 76071, 76114
Couldn't classify 76352, 76416
Sorry, prediction pasa_asmbl_7018.p1 fails validation.
(ATG)	 CC	75757-75859	GT	GTG
(CCC)	 AG	76071-76114	AT	GGA
(GTC)	 AC	76352-76416	GT	GTG
(CCA)	 AG	76569-76718	GT	CGG
(TAT)	 AG	76912-77053	GT	TGG
(GGT)	 AG	77179-77319	GT	TGG
(GTT)	 AG	77440-77560	GT	AGG
(GGT)	 AG	77673-77848	GT	AGG
(GTG)	 AG	78030-78152	GT	AGG
(CCC)	 AG	78387-78574	GT	AGG
(GTC)	 AG	78785-78938	GT	CGG
(GTG)	 AG	79209-79388	GT	CGG
(TGG)	 AG	79620-79832	GT	AGG
(CCG)	 AG	79929-80161	GT	GGG
(GAC)	 AG	80296-80413	GT	AGG
(ATC)	 AG	80607-80877	GT	AGG
(AGT)	 AG	81047-81192	GT	AGG
(GTG)	 AG	81367-81375	CT	AAC
-recovered pasa_asmbl_7018.p1, initial, 75757, 75859
-recovered pasa_asmbl_7018.p1, terminal, 81367, 81375
-recovered pasa_asmbl_7018.p1, internal, 76569, 76718
-recovered pasa_asmbl_7018.p1, internal, 76912, 77053
-recovered pasa_asmbl_7018.p1, internal, 77179, 77319
-recovered pasa_asmbl_7018.p1, internal, 77440, 77560
-recovered pasa_asmbl_7018.p1, internal, 77673, 77848
-recovered pasa_asmbl_7018.p1, internal, 78030, 78152
-recovered pasa_asmbl_7018.p1, internal, 78387, 78574
-recovered pasa_asmbl_7018.p1, internal, 78785, 78938
-recovered pasa_asmbl_7018.p1, internal, 79209, 79388
-recovered pasa_asmbl_7018.p1, internal, 79620, 79832
-recovered pasa_asmbl_7018.p1, internal, 79929, 80161
-recovered pasa_asmbl_7018.p1, internal, 80296, 80413
-recovered pasa_asmbl_7018.p1, internal, 80607, 80877
-recovered pasa_asmbl_7018.p1, internal, 81047, 81192
Valid prediction for GeneMark_model.49274_t
Valid prediction for Augustus_model.g19050.t1
Valid prediction for GlimmerHMM_glimmerT_28529-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11748, rend_intergenic: 5331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16017, rend_intergenic: 13501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20904, rend_intergenic: 16558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24380, rend_intergenic: 21202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30619, rend_intergenic: 25796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46261, rend_intergenic: 37543  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52484, rend_intergenic: 46577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56557, rend_intergenic: 52551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65723, rend_intergenic: 57924  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68523, rend_intergenic: 66103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79188, rend_intergenic: 74330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94306, rend_intergenic: 86223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141247, rend_intergenic: 122624  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155928, rend_intergenic: 152319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165340, rend_intergenic: 157875  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175286, rend_intergenic: 170110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199575, rend_intergenic: 175927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231026, rend_intergenic: 223473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 231684
-exon list size: 1066


building trellis

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-found 40 predictions from path traversal
Error with prediction: snap lend_intergenic: 11748, rend_intergenic: 5331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16017, rend_intergenic: 13501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20904, rend_intergenic: 16558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24380, rend_intergenic: 21202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30619, rend_intergenic: 25796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46261, rend_intergenic: 37543  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52484, rend_intergenic: 46577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56557, rend_intergenic: 52551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65723, rend_intergenic: 57924  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68523, rend_intergenic: 66103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79188, rend_intergenic: 74330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94306, rend_intergenic: 86223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141247, rend_intergenic: 122624  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155928, rend_intergenic: 152319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165340, rend_intergenic: 157875  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175286, rend_intergenic: 170110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199575, rend_intergenic: 175927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231026, rend_intergenic: 223473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support