-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_11/scaffold_11_10660010-10836849

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.49088_t
Valid prediction for Augustus_model.g18982.t1
Valid prediction for snap_scaffold_11-snap.2389-T1
Valid prediction for GlimmerHMM_glimmerT_28439-T1
Valid prediction for GlimmerHMM_glimmerT_28441-T1
Valid prediction for Augustus_model.g18980.t1
Valid prediction for GeneMark_model.49082_t
Valid prediction for Augustus_model.g18983.t1
Valid prediction for GlimmerHMM_glimmerT_28436-T1
Valid prediction for snap_scaffold_11-snap.2409-T1
Valid prediction for GlimmerHMM_glimmerT_28431-T1
Valid prediction for snap_scaffold_11-snap.2404-T1
Couldn't classify 161260, 162156
Sorry, prediction pasa_asmbl_5916.p1 fails validation.
(ACC)	 TG	161260-162156	GT	AGG
(GTA)	 AG	162249-162449	AC	AAA
-recovered pasa_asmbl_5916.p1, terminal, 162249, 162449
Valid prediction for snap_scaffold_11-snap.2400-T1
Valid prediction for GeneMark_model.49084_t
Valid prediction for snap_scaffold_11-snap.2398-T1
Valid prediction for Augustus_model.g18984.t1
Valid prediction for snap_scaffold_11-snap.2392-T1
Valid prediction for GlimmerHMM_glimmerT_28427-T1
Valid prediction for snap_scaffold_11-snap.2399-T1
Valid prediction for GlimmerHMM_glimmerT_28429-T1
Valid prediction for GeneMark_model.49093_t
Valid prediction for GlimmerHMM_glimmerT_28435-T1
Valid prediction for GeneMark_model.49101_t
Valid prediction for GeneMark_model.49097_t
Valid prediction for snap_scaffold_11-snap.2406-T1
Valid prediction for GeneMark_model.49080_t
Valid prediction for snap_scaffold_11-snap.2397-T1
Valid prediction for GeneMark_model.49098_t
Valid prediction for Augustus_model.g18979.t1
Valid prediction for GlimmerHMM_glimmerT_28434-T1
Valid prediction for snap_scaffold_11-snap.2387-T1
Valid prediction for snap_scaffold_11-snap.2394-T1
Valid prediction for GeneMark_model.49103_t
Valid prediction for GeneMark_model.49100_t
Valid prediction for GeneMark_model.49091_t
Valid prediction for Augustus_model.g18986.t1
Valid prediction for Augustus_model.g18981.t1
Valid prediction for GeneMark_model.49096_t
Valid prediction for GeneMark_model.49086_t
Valid prediction for snap_scaffold_11-snap.2403-T1
Valid prediction for GeneMark_model.49090_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g18987.t1
Valid prediction for CodingQuarry_transcript_8204-T1
Valid prediction for GlimmerHMM_glimmerT_28442-T1
Valid prediction for Augustus_model.g18985.t1
Valid prediction for GeneMark_model.49102_t
Valid prediction for snap_scaffold_11-snap.2390-T1
Valid prediction for snap_scaffold_11-snap.2408-T1
Valid prediction for snap_scaffold_11-snap.2413-T1
Valid prediction for GeneMark_model.49099_t
Valid prediction for GeneMark_model.49085_t
Valid prediction for GlimmerHMM_glimmerT_28430-T1
Valid prediction for GeneMark_model.49095_t
Valid prediction for GeneMark_model.49094_t
Valid prediction for snap_scaffold_11-snap.2405-T1
Valid prediction for Augustus_model.g18988.t1
Valid prediction for GeneMark_model.49089_t
Valid prediction for GeneMark_model.49083_t
Valid prediction for GeneMark_model.49104_t
Valid prediction for GlimmerHMM_glimmerT_28437-T1
Valid prediction for GlimmerHMM_glimmerT_28432-T1
Valid prediction for GlimmerHMM_glimmerT_28425-T1
Valid prediction for snap_scaffold_11-snap.2401-T1
Valid prediction for CodingQuarry_transcript_8202-T1
Valid prediction for GlimmerHMM_glimmerT_28440-T1
Valid prediction for snap_scaffold_11-snap.2412-T1
Valid prediction for snap_scaffold_11-snap.2396-T1
Valid prediction for snap_scaffold_11-snap.2391-T1
Valid prediction for snap_scaffold_11-snap.2402-T1
Valid prediction for GlimmerHMM_glimmerT_28428-T1
Valid prediction for GlimmerHMM_glimmerT_28426-T1
Valid prediction for GeneMark_model.49081_t
Valid prediction for snap_scaffold_11-snap.2410-T1
Valid prediction for snap_scaffold_11-snap.2407-T1
Valid prediction for GeneMark_model.49092_t
Valid prediction for GeneMark_model.49105_t
Valid prediction for GeneMark_model.49087_t
Valid prediction for snap_scaffold_11-snap.2393-T1
Valid prediction for snap_scaffold_11-snap.2388-T1
Valid prediction for snap_scaffold_11-snap.2411-T1
Valid prediction for snap_scaffold_11-snap.2395-T1
Valid prediction for GlimmerHMM_glimmerT_28433-T1
Valid prediction for GlimmerHMM_glimmerT_28438-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 43707, rend_intergenic: 42109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53441, rend_intergenic: 50789  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93090, rend_intergenic: 91877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 176840
-exon list size: 281


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.2    
4.6    
4.9    
5.3    
5.7    
6.0    
6.4    
6.7    
7.1    
7.4    
7.8    
8.1    
8.5    
8.8    
9.2    
9.5    
9.9    
10.2    
10.6    
11.0    
11.3    
11.7    
12.0    
12.4    
12.7    
13.1    
13.4    
13.8    
14.1    
14.5    
14.8    
15.2    
15.5    
15.9    
16.3    
16.6    
17.0    
17.3    
17.7    
18.0    
18.4    
18.7    
19.1    
19.4    
19.8    
20.1    
20.5    
20.8    
21.2    
21.6    
21.9    
22.3    
22.6    
23.0    
23.3    
23.7    
24.0    
24.4    
24.7    
25.1    
25.4    
25.8    
26.1    
26.5    
26.9    
27.2    
27.6    
27.9    
28.3    
28.6    
29.0    
29.3    
29.7    
30.0    
30.4    
30.7    
31.1    
31.4    
31.8    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.3    
34.6    
35.0    
35.3    
35.7    
36.0    
36.4    
36.7    
37.1    
37.5    
37.8    
38.2    
38.5    
38.9    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.3    
41.7    
42.0    
42.4    
42.8    
43.1    
43.5    
43.8    
44.2    
44.5    
44.9    
45.2    
45.6    
45.9    
46.3    
46.6    
47.0    
47.3    
47.7    
48.1    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
51.9    
52.3    
52.7    
53.0    
53.4    
53.7    
54.1    
54.4    
54.8    
55.1    
55.5    
55.8    
56.2    
56.5    
56.9    
57.2    
57.6    
58.0    
58.3    
58.7    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.1    
61.5    
61.8    
62.2    
62.5    
62.9    
63.3    
63.6    
64.0    
64.3    
64.7    
65.0    
65.4    
65.7    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.2    
68.6    
68.9    
69.3    
69.6    
70.0    
70.3    
70.7    
71.0    
71.4    
71.7    
72.1    
72.4    
72.8    
73.1    
73.5    
73.9    
74.2    
74.6    
74.9    
75.3    
75.6    
76.0    
76.3    
76.7    
77.0    
77.4    
77.7    
78.1    
78.4    
78.8    
79.2    
79.5    
79.9    
80.2    
80.6    
80.9    
81.3    
81.6    
82.0    
82.3    
82.7    
83.0    
83.4    
83.7    
84.1    
84.5    
84.8    
85.2    
85.5    
85.9    
86.2    
86.6    
86.9    
87.3    
87.6    
88.0    
88.3    
88.7    
89.0    
89.4    
89.8    
90.1    
90.5    
90.8    
91.2    
91.5    
91.9    
92.2    
92.6    
92.9    
93.3    
93.6    
94.0    
94.3    
94.7    
95.1    
95.4    
95.8    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 43707, rend_intergenic: 42109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53441, rend_intergenic: 50789  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93090, rend_intergenic: 91877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support