-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1098

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 773, 850
Sorry, prediction GeneMark_model.108894_t fails validation.
(AGC)	 AG	773-850	GT	GTG
(CAC)	 AG	875-937	GT	GAG
(AGC)	 AG	986-1108	GT	ACG
(GGA)	 AG	1155-1205	GT	AGG
(GAG)	 AG	1228-1233	GT	GAG
(AGG)	 AG	1260-1358	GT	GAG
(GCG)	 AG	2087-2267	GT	GGG
(GTC)	 AG	2294-2299	TC	GAT
-recovered GeneMark_model.108894_t, terminal, 875, 937
-recovered GeneMark_model.108894_t, terminal, 2294, 2299
-recovered GeneMark_model.108894_t, internal, 773, 850
-recovered GeneMark_model.108894_t, internal, 875, 937
-recovered GeneMark_model.108894_t, internal, 986, 1108
-recovered GeneMark_model.108894_t, internal, 1155, 1205
-recovered GeneMark_model.108894_t, internal, 1228, 1233
-recovered GeneMark_model.108894_t, internal, 1260, 1358
-recovered GeneMark_model.108894_t, internal, 2087, 2267
Valid prediction for snap_scaffold_1098-snap.2-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_1098-snap.1-T1
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3298
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support