-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1097

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108892_t
Couldn't classify 906, 968
Couldn't classify 2914, 3107
Sorry, prediction pasa_asmbl_5204.p1 fails validation.
(CAG)	 AG	906-968	GT	AGG
(CGC)	 AG	1246-1479	GT	AGG
(AAC)	 AG	2235-2394	GT	AGG
(TCT)	 AG	2713-2772	GT	CTG
(ATT)	 AG	2914-3107	TA	GTT
-recovered pasa_asmbl_5204.p1, internal, 906, 968
-recovered pasa_asmbl_5204.p1, internal, 1246, 1479
-recovered pasa_asmbl_5204.p1, internal, 2235, 2394
-recovered pasa_asmbl_5204.p1, internal, 2713, 2772
Couldn't classify 2914, 3156
Sorry, prediction GlimmerHMM_glimmerT_62465-T1 fails validation.
(ATG)	 GC	21-254	GT	AGG
(TGC)	 AG	867-968	GT	AGG
(CGC)	 AG	1246-1479	GT	AGG
(TAC)	 AG	2304-2394	GT	AGG
(TCT)	 AG	2713-2793	GT	AGG
(ATT)	 AG	2914-3156	GT	CAG
-recovered GlimmerHMM_glimmerT_62465-T1, initial, 21, 254
-recovered GlimmerHMM_glimmerT_62465-T1, internal, 867, 968
-recovered GlimmerHMM_glimmerT_62465-T1, internal, 1246, 1479
-recovered GlimmerHMM_glimmerT_62465-T1, internal, 2304, 2394
-recovered GlimmerHMM_glimmerT_62465-T1, internal, 2713, 2793
-recovered GlimmerHMM_glimmerT_62465-T1, internal, 2914, 3156
Couldn't classify 2914, 3105
Sorry, prediction snap_scaffold_1097-snap.1-T1 fails validation.
(ATG)	 GC	21-254	GT	AGG
(AAG)	 AG	808-857	GT	ATG
(GAC)	 AG	872-968	GT	AGG
(CGC)	 AG	1246-1479	GT	AGG
(TAC)	 AG	2304-2394	GT	AGG
(TCT)	 AG	2713-2793	GT	AGG
(ATT)	 AG	2914-3105	GT	CGG
-recovered snap_scaffold_1097-snap.1-T1, initial, 21, 254
-recovered snap_scaffold_1097-snap.1-T1, internal, 808, 857
-recovered snap_scaffold_1097-snap.1-T1, internal, 872, 968
-recovered snap_scaffold_1097-snap.1-T1, internal, 1246, 1479
-recovered snap_scaffold_1097-snap.1-T1, internal, 2304, 2394
-recovered snap_scaffold_1097-snap.1-T1, internal, 2713, 2793
-recovered snap_scaffold_1097-snap.1-T1, internal, 2914, 3105
Couldn't classify 1, 254
Couldn't classify 2914, 3050
Sorry, prediction Augustus_model.g41524.t1 fails validation.
(TCA)	 GG	1-254	GT	AGG
(TGC)	 AG	867-968	GT	AGG
(CGC)	 AG	1246-1479	GT	AGG
(AAC)	 AG	2235-2394	GT	AGG
(TCT)	 AG	2713-2772	GT	CTG
(ATT)	 AG	2914-3050	GT	AGG
-recovered Augustus_model.g41524.t1, internal, 867, 968
-recovered Augustus_model.g41524.t1, internal, 1246, 1479
-recovered Augustus_model.g41524.t1, internal, 2235, 2394
-recovered Augustus_model.g41524.t1, internal, 2713, 2772
-recovered Augustus_model.g41524.t1, internal, 2914, 3050

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 223, 344
Sorry, prediction GeneMark_model.108893_t fails validation.
(CGT)	 AG	223-344	GT	AGG
(ACT)	 AG	524-532	GT	GGG
(TTC)	 AG	1066-1167	GT	GAG
(GAG)	 AG	1199-1282	GT	ATG
(AGC)	 AG	1309-1323	GT	GGG
(ACA)	 AG	1345-1365	GT	GGG
(GGA)	 AG	1397-1447	GT	AAG
(AGG)	 AG	1471-1482	GT	AGG
(ACA)	 AG	1506-1526	GT	GGG
(AGA)	 AG	1565-1608	GT	GGG
(GTT)	 AG	1809-2055	GC	GCG
(GGG)	 AG	2079-2129	GT	GGG
(GAG)	 AG	2153-2222	AT	AAA
-recovered GeneMark_model.108893_t, terminal, 2153, 2222
-recovered GeneMark_model.108893_t, internal, 223, 344
-recovered GeneMark_model.108893_t, internal, 524, 532
-recovered GeneMark_model.108893_t, internal, 1066, 1167
-recovered GeneMark_model.108893_t, internal, 1199, 1282
-recovered GeneMark_model.108893_t, internal, 1309, 1323
-recovered GeneMark_model.108893_t, internal, 1345, 1365
-recovered GeneMark_model.108893_t, internal, 1397, 1447
-recovered GeneMark_model.108893_t, internal, 1471, 1482
-recovered GeneMark_model.108893_t, internal, 1506, 1526
-recovered GeneMark_model.108893_t, internal, 1565, 1608
-recovered GeneMark_model.108893_t, internal, 1809, 2055
-recovered GeneMark_model.108893_t, internal, 2079, 2129
Couldn't classify 475, 532
Sorry, prediction snap_scaffold_1097-snap.2-T1 fails validation.
(ATT)	 AG	475-532	GT	GGG
(CTC)	 AG	966-1094	GT	ATG
(CTC)	 AG	1889-2110	GG	GAG
-recovered snap_scaffold_1097-snap.2-T1, terminal, 1889, 2110
-recovered snap_scaffold_1097-snap.2-T1, internal, 475, 532
-recovered snap_scaffold_1097-snap.2-T1, internal, 966, 1094

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3105, rend_intergenic: 1192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3301
-exon list size: 59


building trellis

1.6    
3.3    
4.9    
6.6    
8.2    
9.8    
11.5    
13.1    
14.8    
16.4    
18.0    
19.7    
21.3    
23.0    
24.6    
26.2    
27.9    
29.5    
31.1    
32.8    
34.4    
36.1    
37.7    
39.3    
41.0    
42.6    
44.3    
45.9    
47.5    
49.2    
50.8    
52.5    
54.1    
55.7    
57.4    
59.0    
60.7    
62.3    
63.9    
65.6    
67.2    
68.9    
70.5    
72.1    
73.8    
75.4    
77.0    
78.7    
80.3    
82.0    
83.6    
85.2    
86.9    
88.5    
90.2    
91.8    
93.4    
95.1    
96.7    
98.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3105, rend_intergenic: 1192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support