-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1096

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 535, 574
Sorry, prediction GeneMark_model.108890_t fails validation.
(GAG)	 AG	535-574	GT	AAG
(GGG)	 AG	604-629	GT	GGG
(AAG)	 AG	658-667	GT	AGG
(GCG)	 AG	1003-1133	GT	GTG
(AGA)	 AG	1221-1266	AA	AAA
-recovered GeneMark_model.108890_t, terminal, 1221, 1266
-recovered GeneMark_model.108890_t, internal, 535, 574
-recovered GeneMark_model.108890_t, internal, 604, 629
-recovered GeneMark_model.108890_t, internal, 658, 667
-recovered GeneMark_model.108890_t, internal, 1003, 1133
Couldn't classify 486, 566
Couldn't classify 1742, 1970
Sorry, prediction snap_scaffold_1096-snap.2-T1 fails validation.
(CAG)	 AG	486-566	GT	GAG
(GCG)	 AG	1003-1133	GT	GTG
(GAA)	 AG	1742-1970	GT	CGG
-recovered snap_scaffold_1096-snap.2-T1, internal, 486, 566
-recovered snap_scaffold_1096-snap.2-T1, internal, 1003, 1133
-recovered snap_scaffold_1096-snap.2-T1, internal, 1742, 1970

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 670, 690
Sorry, prediction GeneMark_model.108891_t fails validation.
(GGA)	 AG	670-690	GT	GGG
(AGA)	 AG	1298-1375	GT	CTG
(GAA)	 AG	1589-1603	GT	GAG
(AGA)	 AG	1627-1804	TG	GAT
-recovered GeneMark_model.108891_t, terminal, 1627, 1804
-recovered GeneMark_model.108891_t, internal, 670, 690
-recovered GeneMark_model.108891_t, internal, 1298, 1375
-recovered GeneMark_model.108891_t, internal, 1589, 1603
Couldn't classify 1281, 1367
Couldn't classify 2790, 2890
Sorry, prediction snap_scaffold_1096-snap.1-T1 fails validation.
(ATC)	 AG	1281-1367	GT	ATG
(GGT)	 AG	2234-2239	GT	GGG
(TCT)	 AG	2790-2890	GT	TTG
-recovered snap_scaffold_1096-snap.1-T1, internal, 1281, 1367
-recovered snap_scaffold_1096-snap.1-T1, internal, 2234, 2239
-recovered snap_scaffold_1096-snap.1-T1, internal, 2790, 2890

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2021, rend_intergenic: 486  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3301
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2021, rend_intergenic: 486  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support