-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1095

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62464-T1
Couldn't classify 727, 867
Couldn't classify 3216, 3224
Sorry, prediction GeneMark_model.108889_t fails validation.
(GAG)	 AG	727-867	GT	AGG
(GGG)	 AG	904-1035	GT	GGG
(GGG)	 AG	1072-1206	GT	AAG
(AGC)	 AG	1783-1789	GT	ATG
(AGA)	 AG	1839-1858	GT	ACG
(GCA)	 AG	2903-2914	GT	AGG
(GCA)	 AG	2947-2958	GT	AGG
(TGT)	 AG	3178-3186	GT	GAG
(TGT)	 AG	3216-3224	GT	GAG
-recovered GeneMark_model.108889_t, terminal, 3178, 3186
-recovered GeneMark_model.108889_t, internal, 727, 867
-recovered GeneMark_model.108889_t, internal, 904, 1035
-recovered GeneMark_model.108889_t, internal, 1072, 1206
-recovered GeneMark_model.108889_t, internal, 1783, 1789
-recovered GeneMark_model.108889_t, internal, 1839, 1858
-recovered GeneMark_model.108889_t, internal, 2903, 2914
-recovered GeneMark_model.108889_t, internal, 2947, 2958
-recovered GeneMark_model.108889_t, internal, 3178, 3186
-recovered GeneMark_model.108889_t, internal, 3216, 3224
Couldn't classify 727, 1212
Sorry, prediction snap_scaffold_1095-snap.1-T1 fails validation.
(GAG)	 AG	727-1212	GT	CGG
-recovered snap_scaffold_1095-snap.1-T1, internal, 727, 1212

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3303
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support