-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1093

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108883_t
Valid prediction for snap_scaffold_1093-snap.1-T1
add_exon() Sorry, snap_scaffold_1093-snap.1-T1 189-759-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62461-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 173, 467
Sorry, prediction GeneMark_model.108887_t fails validation.
(TGC)	 AG	173-467	GT	CAG
(TGC)	 AG	637-838	GG	GAG
-recovered GeneMark_model.108887_t, terminal, 637, 838
-recovered GeneMark_model.108887_t, internal, 173, 467
Couldn't classify 162, 482
Couldn't classify 1927, 2247
Sorry, prediction snap_scaffold_1093-snap.2-T1 fails validation.
(TAT)	 AG	162-482	GT	CTG
(TGC)	 AG	637-826	GT	AGG
(GGC)	 AG	1927-2247	GT	TGG
-recovered snap_scaffold_1093-snap.2-T1, internal, 162, 482
-recovered snap_scaffold_1093-snap.2-T1, internal, 637, 826
-recovered snap_scaffold_1093-snap.2-T1, internal, 1927, 2247
Couldn't classify 637, 826
Sorry, prediction Augustus_model.g41522.t1 fails validation.
(TGC)	 AG	637-826	GT	AGG
(CCC)	 AG	1181-1212	GT	AGG
(AAG)	 AG	1685-1793	CC	GAC
-recovered Augustus_model.g41522.t1, terminal, 1685, 1793
-recovered Augustus_model.g41522.t1, internal, 637, 826
-recovered Augustus_model.g41522.t1, internal, 1181, 1212
Couldn't classify 162, 482
Sorry, prediction GlimmerHMM_glimmerT_62462-T1 fails validation.
(TAT)	 AG	162-482	GT	CTG
(TGC)	 AG	637-838	GG	GAG
-recovered GlimmerHMM_glimmerT_62462-T1, terminal, 637, 838
-recovered GlimmerHMM_glimmerT_62462-T1, internal, 162, 482
Valid prediction for GeneMark_model.108886_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3307
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 4 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support