-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1092

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 240, 284
Sorry, prediction GlimmerHMM_glimmerT_62460-T1 fails validation.
(GGT)	 AG	240-284	GT	CGG
(GGT)	 AG	2502-2564	GT	AGG
(GGA)	 AG	2951-3014	AC	GAA
-recovered GlimmerHMM_glimmerT_62460-T1, terminal, 2951, 3014
-recovered GlimmerHMM_glimmerT_62460-T1, internal, 240, 284
-recovered GlimmerHMM_glimmerT_62460-T1, internal, 2502, 2564
Couldn't classify 240, 284
Couldn't classify 2951, 3004
Sorry, prediction Augustus_model.g41521.t1 fails validation.
(GGT)	 AG	240-284	GT	CGG
(GGT)	 AG	2502-2564	GT	AGG
(GGA)	 AG	2951-3004	GT	CAG
-recovered Augustus_model.g41521.t1, internal, 240, 284
-recovered Augustus_model.g41521.t1, internal, 2502, 2564
-recovered Augustus_model.g41521.t1, internal, 2951, 3004

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3311
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support