-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1091

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 714, 778
Sorry, prediction Augustus_model.g41520.t1 fails validation.
(AGA)	 AG	714-778	GT	GAG
(ATC)	 AG	1641-1684	GT	AGG
(GAC)	 AG	3022-3075	GA	GAG
-recovered Augustus_model.g41520.t1, terminal, 714, 778
-recovered Augustus_model.g41520.t1, terminal, 3022, 3075
-recovered Augustus_model.g41520.t1, internal, 714, 778
-recovered Augustus_model.g41520.t1, internal, 1641, 1684
Couldn't classify 71, 204
Couldn't classify 3022, 3071
Sorry, prediction snap_scaffold_1091-snap.1-T1 fails validation.
(GAA)	 AG	71-204	GT	TGG
(GAC)	 AG	3022-3071	GT	GGG
-recovered snap_scaffold_1091-snap.1-T1, internal, 71, 204
-recovered snap_scaffold_1091-snap.1-T1, internal, 3022, 3071

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1436, 1568
Sorry, prediction GeneMark_model.108882_t fails validation.
(GGG)	 AG	1436-1568	GT	AAG
(GCT)	 AG	3102-3302	AG	AGA
-recovered GeneMark_model.108882_t, terminal, 3102, 3302
-recovered GeneMark_model.108882_t, internal, 1436, 1568

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3317
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support