-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1090

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108880_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 655, 768
Sorry, prediction GeneMark_model.108881_t fails validation.
(AGA)	 AG	655-768	GC	GGG
(ACG)	 AG	932-983	TT	AGT
-recovered GeneMark_model.108881_t, terminal, 932, 983
-recovered GeneMark_model.108881_t, internal, 655, 768
Valid prediction for snap_scaffold_1090-snap.1-T1
add_exon() Sorry, snap_scaffold_1090-snap.1-T1 2511-2675-initial-1 is invalid.
add_exon() Sorry, snap_scaffold_1090-snap.1-T1 3147-3195-terminal-1 is invalid.
Couldn't classify 3164, 3241
Sorry, prediction GeneMark_model.108879_t fails validation.
(ATG)	 CC	2572-2675	GT	CGG
(AGA)	 AG	2728-2847	GT	CAG
(AGA)	 AG	2871-2963	GT	GAG
(TGA)	 AG	2989-3060	GT	GAG
(AGA)	 AG	3164-3241	GT	AGG
-recovered GeneMark_model.108879_t, initial, 2572, 2675
-recovered GeneMark_model.108879_t, internal, 2728, 2847
-recovered GeneMark_model.108879_t, internal, 2871, 2963
-recovered GeneMark_model.108879_t, internal, 2989, 3060
-recovered GeneMark_model.108879_t, internal, 3164, 3241

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3322
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support