-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1088

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 245
Sorry, prediction Augustus_model.g41518.t1 fails validation.
(GAG)	 CC	1-245	GT	AGG
(ATT)	 AG	480-538	GT	AGG
(TCC)	 AG	662-738	CT	AAC
-recovered Augustus_model.g41518.t1, terminal, 662, 738
-recovered Augustus_model.g41518.t1, internal, 480, 538
Couldn't classify 117, 245
Sorry, prediction snap_scaffold_1088-snap.1-T1 fails validation.
(AGA)	 AG	117-245	GT	AGG
(ATT)	 AG	480-538	GT	AGG
(TCC)	 AG	662-738	CT	AAC
-recovered snap_scaffold_1088-snap.1-T1, terminal, 662, 738
-recovered snap_scaffold_1088-snap.1-T1, internal, 117, 245
-recovered snap_scaffold_1088-snap.1-T1, internal, 480, 538
Couldn't classify 48, 245
Sorry, prediction GeneMark_model.108877_t fails validation.
(AGA)	 AG	48-245	GT	AGG
(GTA)	 AG	539-596	AC	GAA
-recovered GeneMark_model.108877_t, terminal, 539, 596
-recovered GeneMark_model.108877_t, internal, 48, 245

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62457-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3326
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support