-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1087

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3098, 3212
Sorry, prediction GeneMark_model.108876_t fails validation.
(ATG)	 GG	2707-2912	GC	AGG
(AGA)	 AG	2935-2940	GC	AGG
(AGA)	 AG	2963-2977	GT	CAG
(AGA)	 AG	3011-3052	GT	CAG
(AAT)	 AG	3098-3212	GT	AAG
-recovered GeneMark_model.108876_t, initial, 2707, 2912
-recovered GeneMark_model.108876_t, internal, 2935, 2940
-recovered GeneMark_model.108876_t, internal, 2963, 2977
-recovered GeneMark_model.108876_t, internal, 3011, 3052
-recovered GeneMark_model.108876_t, internal, 3098, 3212
Couldn't classify 2510, 2857
Sorry, prediction Augustus_model.g41517.t1 fails validation.
(AGG)	 AG	2510-2857	GT	CGG
-recovered Augustus_model.g41517.t1, internal, 2510, 2857
Valid prediction for GlimmerHMM_glimmerT_62456-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 511, 795
Couldn't classify 828, 1308
Sorry, prediction snap_scaffold_1087-snap.1-T1 fails validation.
(GGT)	 AG	511-795	GT	AGG
(GGG)	 AG	828-1308	GT	AGG
-recovered snap_scaffold_1087-snap.1-T1, internal, 511, 795
-recovered snap_scaffold_1087-snap.1-T1, internal, 828, 1308
Valid prediction for GlimmerHMM_glimmerT_62455-T1
Valid prediction for GeneMark_model.108875_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3327
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support