-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1085

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108870_t
Couldn't classify 125, 295
Couldn't classify 2865, 3053
Sorry, prediction snap_scaffold_1085-snap.2-T1 fails validation.
(GAG)	 AG	125-295	GT	AAG
(AGA)	 AG	2865-3053	GT	CTG
-recovered snap_scaffold_1085-snap.2-T1, internal, 125, 295
-recovered snap_scaffold_1085-snap.2-T1, internal, 2865, 3053

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3162, 3301
Sorry, prediction GeneMark_model.108869_t fails validation.
(ATG)	 CC	2331-2350	GT	CTG
(GAG)	 AG	2472-2477	GT	AAG
(AGA)	 AG	2499-2632	GT	AAG
(AGC)	 AG	3162-3301	GT	AGG
-recovered GeneMark_model.108869_t, initial, 2331, 2350
-recovered GeneMark_model.108869_t, internal, 2472, 2477
-recovered GeneMark_model.108869_t, internal, 2499, 2632
-recovered GeneMark_model.108869_t, internal, 3162, 3301
Couldn't classify 375, 457
Couldn't classify 3188, 3301
Sorry, prediction snap_scaffold_1085-snap.1-T1 fails validation.
(AGT)	 AG	375-457	GT	AGG
(CGC)	 AG	3188-3301	GT	AGG
-recovered snap_scaffold_1085-snap.1-T1, internal, 375, 457
-recovered snap_scaffold_1085-snap.1-T1, internal, 3188, 3301
Couldn't classify 34, 156
Sorry, prediction GeneMark_model.108871_t fails validation.
(AGA)	 AG	34-156	GT	CAG
(AGA)	 AG	196-281	GT	TGG
(TCA)	 AG	357-469	GA	AAG
-recovered GeneMark_model.108871_t, terminal, 357, 469
-recovered GeneMark_model.108871_t, internal, 34, 156
-recovered GeneMark_model.108871_t, internal, 196, 281
Valid prediction for Augustus_model.g41515.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2955, rend_intergenic: 125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3329
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2955, rend_intergenic: 125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support