-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1083

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1664, 1799
Sorry, prediction GlimmerHMM_glimmerT_62450-T1 fails validation.
(TCG)	 AG	1664-1799	GT	ATG
(GTG)	 AG	1883-2243	GG	AGG
-recovered GlimmerHMM_glimmerT_62450-T1, terminal, 1883, 2243
-recovered GlimmerHMM_glimmerT_62450-T1, internal, 1664, 1799
Couldn't classify 11, 180
Couldn't classify 3279, 3320
Sorry, prediction GeneMark_model.108864_t fails validation.
(AAG)	 AG	11-180	GT	GGG
(AAG)	 AG	209-334	GT	GGG
(AAG)	 AG	355-372	GT	AAG
(TAC)	 AG	496-507	GT	GGG
(TAC)	 AG	528-539	GT	GGG
(TAC)	 AG	560-571	GT	GGG
(TGG)	 AG	597-638	GT	TTG
(GTT)	 AG	985-1083	GT	GAG
(AGG)	 AG	1117-1140	GT	GAG
(AGG)	 AG	1174-1197	GT	GAG
(GAG)	 AG	1382-1464	GT	GCG
(TCG)	 AG	1664-1799	GT	ATG
(GTG)	 AG	1883-2239	GT	ATG
(GAC)	 AG	3279-3320	GT	CCG
-recovered GeneMark_model.108864_t, internal, 11, 180
-recovered GeneMark_model.108864_t, internal, 209, 334
-recovered GeneMark_model.108864_t, internal, 355, 372
-recovered GeneMark_model.108864_t, internal, 496, 507
-recovered GeneMark_model.108864_t, internal, 528, 539
-recovered GeneMark_model.108864_t, internal, 560, 571
-recovered GeneMark_model.108864_t, internal, 597, 638
-recovered GeneMark_model.108864_t, internal, 985, 1083
-recovered GeneMark_model.108864_t, internal, 1117, 1140
-recovered GeneMark_model.108864_t, internal, 1174, 1197
-recovered GeneMark_model.108864_t, internal, 1382, 1464
-recovered GeneMark_model.108864_t, internal, 1664, 1799
-recovered GeneMark_model.108864_t, internal, 1883, 2239
-recovered GeneMark_model.108864_t, internal, 3279, 3320
Couldn't classify 1875, 2243
Sorry, prediction pasa_asmbl_5196.p2 fails validation.
(GCT)	 CT	1875-2243	GG	AGG
Couldn't classify 1664, 1799
Sorry, prediction Augustus_model.g41513.t1 fails validation.
(TCG)	 AG	1664-1799	GT	ATG
(GTG)	 AG	1883-2243	GG	AGG
-recovered Augustus_model.g41513.t1, terminal, 1883, 2243
-recovered Augustus_model.g41513.t1, internal, 1664, 1799
Valid prediction for snap_scaffold_1083-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3338
-exon list size: 32


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support