-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1081

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1081-snap.2-T1
Couldn't classify 33, 44
Sorry, prediction GeneMark_model.108861_t fails validation.
(GGG)	 AG	33-44	GT	CTG
(AGA)	 AG	733-801	GT	CTG
(AGA)	 AG	837-872	GT	ATG
(ACA)	 AG	895-993	GT	GAG
(ACA)	 AG	1029-1095	CC	AGC
-recovered GeneMark_model.108861_t, terminal, 1029, 1095
-recovered GeneMark_model.108861_t, internal, 33, 44
-recovered GeneMark_model.108861_t, internal, 733, 801
-recovered GeneMark_model.108861_t, internal, 837, 872
-recovered GeneMark_model.108861_t, internal, 895, 993
Valid prediction for snap_scaffold_1081-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 37, 128
Sorry, prediction GeneMark_model.108862_t fails validation.
(CAG)	 AG	37-128	GT	ACG
(AAG)	 AG	452-786	TG	AGT
-recovered GeneMark_model.108862_t, terminal, 452, 786
-recovered GeneMark_model.108862_t, internal, 37, 128
Valid prediction for Augustus_model.g41512.t1
add_exon() Sorry, Augustus_model.g41512.t1 452-786-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62448-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62448-T1 452-786-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3344
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support