-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1080

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 54, 119
Sorry, prediction GeneMark_model.108859_t fails validation.
(AGA)	 AG	54-119	GT	GAG
(AAA)	 AG	218-240	GT	GGG
(AGG)	 AG	550-583	GT	GAG
(AGG)	 AG	609-630	AG	AGA
-recovered GeneMark_model.108859_t, terminal, 609, 630
-recovered GeneMark_model.108859_t, internal, 54, 119
-recovered GeneMark_model.108859_t, internal, 218, 240
-recovered GeneMark_model.108859_t, internal, 550, 583
Couldn't classify 2706, 2787
Sorry, prediction snap_scaffold_1080-snap.1-T1 fails validation.
(ATG)	 AG	10-119	GT	GAG
(GTC)	 AG	2706-2787	GT	AGG
-recovered snap_scaffold_1080-snap.1-T1, initial, 10, 119
-recovered snap_scaffold_1080-snap.1-T1, internal, 10, 119
-recovered snap_scaffold_1080-snap.1-T1, internal, 2706, 2787

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108860_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3345
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support