-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_108

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106590_t
Valid prediction for snap_scaffold_108-snap.1-T1
Valid prediction for GeneMark_model.106588_t
Valid prediction for GlimmerHMM_glimmerT_61301-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61301-T1 930-1096-terminal-1 is invalid.
Valid prediction for snap_scaffold_108-snap.4-T1
Couldn't classify 13443, 13680
Sorry, prediction snap_scaffold_108-snap.5-T1 fails validation.
(ATG)	 AG	9523-9527	GT	AGG
(ACA)	 AG	13443-13680	GT	CAG
-recovered snap_scaffold_108-snap.5-T1, initial, 9523, 9527
-recovered snap_scaffold_108-snap.5-T1, internal, 9523, 9527
-recovered snap_scaffold_108-snap.5-T1, internal, 13443, 13680
Valid prediction for GlimmerHMM_glimmerT_61302-T1
Valid prediction for GeneMark_model.106592_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106587_t
Valid prediction for GeneMark_model.106585_t
Valid prediction for snap_scaffold_108-snap.2-T1
Valid prediction for GeneMark_model.106589_t
Couldn't classify 2145, 2209
Sorry, prediction snap_scaffold_108-snap.3-T1 fails validation.
(TGG)	 AG	2145-2209	GT	ATG
(GGG)	 AG	6539-6640	GT	GGG
(GAG)	 AG	6808-7213	GT	AGG
(CGT)	 AG	11349-11532	GT	ATG
(CGC)	 AG	12001-12321	AC	AGA
-recovered snap_scaffold_108-snap.3-T1, terminal, 12001, 12321
-recovered snap_scaffold_108-snap.3-T1, internal, 2145, 2209
-recovered snap_scaffold_108-snap.3-T1, internal, 6539, 6640
-recovered snap_scaffold_108-snap.3-T1, internal, 6808, 7213
-recovered snap_scaffold_108-snap.3-T1, internal, 11349, 11532
Couldn't classify 160, 180
Sorry, prediction GeneMark_model.106593_t fails validation.
(TGA)	 AG	160-180	GT	GAG
(GGG)	 AG	990-1046	GT	AGG
(GGA)	 AG	1071-1082	GT	AGG
(GAG)	 AG	1117-1152	GT	GAG
(ATC)	 AG	1177-1191	GT	AGG
(GGA)	 AG	1217-1228	GT	AGG
(GCA)	 AG	1263-1365	TT	GAT
-recovered GeneMark_model.106593_t, terminal, 1263, 1365
-recovered GeneMark_model.106593_t, internal, 160, 180
-recovered GeneMark_model.106593_t, internal, 990, 1046
-recovered GeneMark_model.106593_t, internal, 1071, 1082
-recovered GeneMark_model.106593_t, internal, 1117, 1152
-recovered GeneMark_model.106593_t, internal, 1177, 1191
-recovered GeneMark_model.106593_t, internal, 1217, 1228
Valid prediction for GeneMark_model.106586_t
Valid prediction for GeneMark_model.106591_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3084, rend_intergenic: 2033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12974, rend_intergenic: 3245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 15118
-exon list size: 105


building trellis

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-found 5 predictions from path traversal
Error with prediction: snap lend_intergenic: 3084, rend_intergenic: 2033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12974, rend_intergenic: 3245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support