-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1079

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108858_t
Valid prediction for Augustus_model.g41511.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3239, 3269
Sorry, prediction GeneMark_model.108856_t fails validation.
(ATG)	 GG	2135-2157	GT	GAG
(TGA)	 AG	2182-2193	GT	GAG
(TGA)	 AG	2217-2258	GT	GAG
(AGG)	 AG	2287-2313	GT	GAG
(TGA)	 AG	2336-2356	GT	GAG
(AGG)	 AG	2387-2401	GT	GAG
(AGA)	 AG	2427-2440	GT	TAG
(GGG)	 AG	3239-3269	GT	AGG
-recovered GeneMark_model.108856_t, initial, 2135, 2157
-recovered GeneMark_model.108856_t, internal, 2182, 2193
-recovered GeneMark_model.108856_t, internal, 2217, 2258
-recovered GeneMark_model.108856_t, internal, 2287, 2313
-recovered GeneMark_model.108856_t, internal, 2336, 2356
-recovered GeneMark_model.108856_t, internal, 2387, 2401
-recovered GeneMark_model.108856_t, internal, 2427, 2440
-recovered GeneMark_model.108856_t, internal, 3239, 3269
Valid prediction for GeneMark_model.108857_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3346
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support