-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1078

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 64
Sorry, prediction Augustus_model.g41510.t1 fails validation.
(TGT)	 TC	1-64	GT	AGG
(GGA)	 AG	814-1050	GT	AGG
(ATC)	 AG	1278-1410	GT	ACG
(AGG)	 AG	2677-2817	CC	AGC
-recovered Augustus_model.g41510.t1, terminal, 2677, 2817
-recovered Augustus_model.g41510.t1, internal, 814, 1050
-recovered Augustus_model.g41510.t1, internal, 1278, 1410
Couldn't classify 17, 64
Couldn't classify 2679, 2796
Sorry, prediction GeneMark_model.108855_t fails validation.
(AGG)	 AG	17-64	GT	AGG
(GGA)	 AG	814-1050	GT	AGG
(GCT)	 AG	1326-1454	GT	GCG
(GCT)	 AG	2679-2796	GT	AGG
-recovered GeneMark_model.108855_t, internal, 17, 64
-recovered GeneMark_model.108855_t, internal, 814, 1050
-recovered GeneMark_model.108855_t, internal, 1326, 1454
-recovered GeneMark_model.108855_t, internal, 2679, 2796
Couldn't classify 2677, 2796
Sorry, prediction GlimmerHMM_glimmerT_62447-T1 fails validation.
(ATG)	 GC	1269-1454	GT	GCG
(AGG)	 AG	2677-2796	GT	AGG
-recovered GlimmerHMM_glimmerT_62447-T1, initial, 1269, 1454
-recovered GlimmerHMM_glimmerT_62447-T1, internal, 2677, 2796

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1078-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3348
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support