-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1077

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1304, 1953
Sorry, prediction snap_scaffold_1077-snap.1-T1 fails validation.
(ATG)	 AA	458-469	GT	AGG
(GAC)	 AG	858-1289	GT	ATG
(GGC)	 AG	1304-1953	GT	CGG
-recovered snap_scaffold_1077-snap.1-T1, initial, 458, 469
-recovered snap_scaffold_1077-snap.1-T1, internal, 858, 1289
-recovered snap_scaffold_1077-snap.1-T1, internal, 1304, 1953
Couldn't classify 863, 1351
Sorry, prediction GeneMark_model.108853_t fails validation.
(GGC)	 AG	863-1351	GT	ATG
(CGG)	 AG	1375-1972	CT	GAC
-recovered GeneMark_model.108853_t, terminal, 1375, 1972
-recovered GeneMark_model.108853_t, internal, 863, 1351
Valid prediction for GlimmerHMM_glimmerT_62445-T1
Valid prediction for GlimmerHMM_glimmerT_62446-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 448, 1042
Sorry, prediction snap_scaffold_1077-snap.2-T1 fails validation.
(GAA)	 AG	448-1042	GT	ACG
-recovered snap_scaffold_1077-snap.2-T1, internal, 448, 1042
Valid prediction for GeneMark_model.108854_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3348
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support